Table 2. Details of the Japanese encephalitis viruses used in the phylogenetic analysis.
| Strain | Genotype | Location | Sampling year | GenBank accession number. |
|---|---|---|---|---|
| YN86-B8639 | 1 | China | 1986 | DQ404133 |
| SH80 | 1 | China | 2001 | JN381848 |
| 3XG009 | 1 | China | 2011 | JX514950 |
| IND/11/WB/JEV45 | 1 | India | 2011 | KC526872 |
| 99P104 | 1 | Japan | 1999 | FJ943474 |
| 09P123 | 1 | Japan | 2009 | GU108334 |
| K94P05 | 1 | South Korea | 1994 | U34929 |
| K01-JN | 1 | South Korea | 2001 | FJ938222 |
| K05-GS | 1 | South Korea | 2005 | FJ938223 |
| A10.825 | 1 | South Korea | 2010 | JN587259 |
| K10CT661 | 1 | South Korea | 2010 | JX018150 |
| TC2009-11 | 1 | Taiwan | 2009 | JF499801 |
| CY2010-3 | 1 | Taiwan | 2010 | JF499824 |
| ThCMAr4492 | 1 | Thailand | 1992 | D45362 |
| JE_CM_1196 | 1 | Thailand | 2005 | DQ238602 |
| 90VN70 | 1 | Vietnam | 1990 | HM228921 |
| VN88 | 1 | Vietnam | 2001 | AY376464 |
| 07VN310 | 1 | Vietnam | 2007 | HM228922 |
| FU | 2 | Australia | 1995 | AF217620 |
| JKT5441 | 2 | Indonesia | 1980-Jun | JQ429306 |
| BN19 | 3 | China | 1982 | FJ185038 |
| YN03-A151 | 3 | China | 1998 | DQ404136 |
| SCDJY01 | 3 | China | 2011 | JX045833 |
| GP78 | 3 | India | 1978 | AF075723 |
| IND/12/WB/JEV50 | 3 | India | 2012 | KC526871 |
| JaOArS982 | 3 | Japan | 1982 | M18370 |
| JaNAr0290 | 3 | Japan | 1990 | AY427794 |
| K88A071 | 3 | South Korea | 1988 | FJ938228 |
| K94A071 | 3 | South Korea | 1994 | FJ938217 |
| CH1392 | 3 | Taiwan | 1990 | AF254452 |
| YL0506a | 3 | Taiwan | 2005 | GQ260611 |
| HL0805a | 3 | Taiwan | 2008 | GQ260628 |
| VN207 | 3 | Vietnam | 1986 | AY376461 |
| 04VN75 | 3 | Vietnam | 2004 | HQ009263 |
| JKT6468 | 4 | Indonesia | 1981 | AY184212 |
| XZ0934 | 5 | China | 2009 | JF915894 |
| Muar | 5 | Malaysia | 1952 | HM596272 |
| 10-1827 | 5 | South Korea | 2010 | JN587258 |