Table 2. Gene content in the four prevalent chromatin states of H1hesc and K562 cell lines.
Chromatin states | EC1 | EC2 | EC3 | EC4 | C1 | C2 | C3 | C4 |
---|---|---|---|---|---|---|---|---|
promoter count | 7653 | 5047 | 1138 | 1505 | 9588 | 3089 | 2334 | 827 |
promoter density per Mb | 13.127 | 9.278 | 1.497 | 2.16 | 15.861 | 7.812 | 2.953 | 1.133 |
mean gene expression (RPKM) | 30.537 | 7.76 | 0.798 | 1.299 | 18.529 | 2.307 | 0.696 | 0.244 |
median gene expression (RPKM) | 8.527 | 0.988 | 0.008 | 0.025 | 5.58 | 0.29 | 0.005 | 0 |
mean gene length (kb) | 50.999 | 72.705 | 56.335 | 67.538 | 43.557 | 58.535 | 86.301 | 173.962 |
For each chromatin state the following information is given: (i) the total number of promoters per chromatin state, (ii) the density of promoters per Mb, (iii) the mean level of expression per chromatin state in RPKM (Materials and Methods), (iv) the median level of expression per chromatin state in RPKM, (v) the mean gene length per chromatin state in kb.