Table 1.
Genes from developmental signaling pathways
| Signaling pathway | Gene family | Reference | Dataset | Pos. | Both | Int. | Trend |
|---|---|---|---|---|---|---|---|
| Wnt | Wnt proteins | 13 (27) | 10 (17) | 8 | - | - | Up tips |
| Frizzled | 8 (16) | 8 (12) | - | 1 | - | Up A. palm tips | |
| Fzd-related | 2 (4) | 2 (4) | 1 | - | - | Up tips | |
| LRP | 9 (45) | 8 (25) | 1 | - | 1 | Up A. cerv tips | |
| Kremen | 1 | 1 | 1 | - | - | Up tips | |
| Dkk3 | 1 (6) | 1 (6) | 4 | - | - | Up tips | |
| Sox9 | 1 (2) | 1 (2) | - | 1 | - | Up A. palm tips | |
| Ror2 | 1 (3) | 1 (3) | - | - | - | - | |
| Axin | 1 | 1 | - | - | - | - | |
| ß-catenin | 1 | 1 | - | - | - | - | |
| GSK-3ß | 1 (2) | 1 (2) | - | - | - | - | |
| Dishevelled | 1 | 1 | - | - | - | - | |
| Sprouty | 2 (3) | 2 (3) | - | - | - | - | |
| Wnt inhibitory factor | 1 (2) | 1 | - | - | - | - | |
| Notch | Notch | 5 (53) | 5 (23) | 5 | 1 | - | Up A. cerv tips |
| Delta/Delta-like | 6 (10) | 2 (3) | - | - | - | - | |
| Jagged | 4 (8) | 3 (4) | - | - | - | - | |
| Hairy/enhancer of split | 1 (3) | 1 (3) | - | - | - | - | |
| E3 ubiquitin ligase MIB | 2 (18) | 2 (14) | 1 | - | - | Up bases | |
| Suppressor of hairless | 2 (2) | 2 (2) | - | - | - | - | |
| Numb | 1 | 1 | - | - | - | - | |
| BMP | BMP | 7 (15) | 4 (10) | 1 | - | - | Up bases |
| BMP receptor | 2 (2) | 2 (2) | - | - | - | - | |
| Chordin/chordin-like/kielin | 3 (9) | 3 (9) | 1 | - | - | Up bases |
Number of genes (transcripts in parentheses) found in annotated coral transcriptome (Reference), and in the dataset. Numbers of DE genes for colony position (Pos.) and both factors (Both) indicate transcripts with > 2-fold change in expression.