Table 2.
Expression of genes related to antibiotic resistance (excluding efflux pumps)
| PA30 | PA49 | ||||
|---|---|---|---|---|---|
| Gene ID/accession | Product | T | W | T | W |
| gi|489182848 | Acriflavin resistance protein | n.p.a | n.p. | 524 | 416 |
| gi|496684660 | Bleomycin resistance protein | n.p. | n.p. | 1808 | 1737 |
| gi|489211498 | Beta-lactamase | n.p. | n.p. | 1028 | 435 |
| gi|489251134 | VIM-1 protein | n.p. | n.p. | 35 957 | 39 477 |
| gi|32470063 | Hypothetical protein | n.p. | n.p. | 50 184 | 48 460 |
| gi|88853419 | Aminoglycoside-modifying enzyme | n.p. | n.p. | 4358 | 3280 |
| gi|378773997 | 2.-aminoglycoside nucleotidyltransferase | n.p. | n.p. | 7275 | 5761 |
| gi|496684693 | Glyoxalase/bleomycin resistance protein/dioxygenase | n.p. | n.p. | 362 | 1547 |
| gi|160901172 | Acriflavine resistance protein B | n.p. | n.p. | 468 | 408 |
| gi|489217979 | Beta-lactamase | n.p. | n.p. | 109 | 64 |
| PA0706 | Chloramphenicol acetyltransferase | 399 | 304 | 48 | 73 |
| gi|489208693 | Fusaric acid resistance protein | 25 | 18 | 30 | 18 |
| gi|116049746 | Beta-lactamase | 107 | 64 | 272 | 131 |
| PA1129 | Probable fosfomycin resistance protein | 82 | 54 | 33 | 11 |
| PA5514 | Probable beta-lactamase | 258 | 285 | 191 | 422 |
| PA1959 | Bacitracin resistance protein | 385 | 925 | 110 | 219 |
| PA4110 | Beta-lactamase precursor AmpC | 694 | 382 | 101 | 74 |
| PA4119 | Aminoglycoside 3'-phosphotransferase type IIb | 113 | 177 | 37 | 40 |
| PA5159 | Multi-drug resistance protein | 79 | 66 | 65 | 120 |
| PA1858 | Streptomycin 3'’-phosphotransferase | 145 | 131 | 31 | 52 |
| gi|407937916 | beta-lactamase domain-containing protein | 233 | 201 | n.p. | n.p. |
a
n.p. – gene sequence is not present in this strain.
Identifiers state PAO1 gene IDs or RefSeq accession where applicable. Transcriptional activity in tap water (T) and waste water (W) was normalized for the two strains independently and is shown as normalized pseudocounts.