. 2014 Sep 3;8(1):116–130. doi: 10.1111/1751-7915.12156

Table 4.

Expression of genes related to genetic mobility and horizontal gene transfer

		PA30		PA49
Gene ID/accession	Product	T	W	T	W
gi\|386063806	Conjugal transfer protein TrbJ	n.p.^a	n.p.	4	7
gi\|446855879	Conjugal transfer protein TrbE	n.p.	n.p.	58	33
gi\|446855879	Conjugal transfer protein TrbE	n.p.	n.p.	26	21
gi\|386063808	Conjugal transfer protein TrbC	n.p.	n.p.	10	16
gi\|51492563	TnpA	n.p.	n.p.	481	609
gi\|66045904	TnpR resolvase	n.p.	n.p.	2370	3179
gi\|19352419	Putative transposase	n.p.	n.p.	3570	2090
gi\|498491672	Excisionase family DNA binding domain-containing protein	n.p.	n.p.	263	432
gi\|496684679	Conjugal transfer coupling protein TraG	n.p.	n.p.	22	8
gi\|190573650	Transposase	n.p.	n.p.	218	206
gi\|190572552	Transposase IS3	n.p.	n.p.	189	156
gi\|497209012	Transposase	n.p.	n.p.	0	0
gi\|495918616	Integrase	n.p.	n.p.	187	126
gi\|37958842	Putative transposase	n.p.	n.p.	202	452
gi\|386063806	Conjugal transfer protein TrbJ	n.p.	n.p.	29	5
gi\|446923490	Conjugal transfer protein TrbL	n.p.	n.p.	66	40
gi\|410690825	Transposase	n.p.	n.p.	837	2156
gi\|319765135	Transposase TniA	n.p.	n.p.	874	1657
gi\|491446119	TniQ	n.p.	n.p.	448	546
gi\|490385992	Transposase	n.p.	n.p.	26	30
gi\|497303964	Integrating conjugative element protein	n.p.	n.p.	4	6
gi\|497081867	Conjugative transfer region protein	n.p.	n.p.	2	2
gi\|497303936	Integrating conjugative element protein	n.p.	n.p.	0	0
gi\|497081861	Integrating conjugative element protein	n.p.	n.p.	13	11
gi\|493535069	Integrating conjugative element protein. PFL_4709 family	n.p.	n.p.	19	19
gi\|497081686	Integrase family protein	n.p.	n.p.	223	259
gi\|133756449	TniA	n.p.	n.p.	498	866
gi\|289064112	TniQ transposition protein	n.p.	n.p.	57	45
gi\|410609201	Transposase	n.p.	n.p.	2789	2351
gi\|446985433	Integrase	n.p.	n.p.	0	1
PA4797	Probable transposase	n.p.	n.p.	1294	879
gi\|496684684	Conjugal transfer protein TrbE	n.p.	n.p.	28	27
gi\|496684684	Conjugal transfer protein TrbE	n.p.	n.p.	13	15
gi\|496684684	Conjugal transfer protein TrbE	n.p.	n.p.	7	12
gi\|496684685	Conjugal transfer protein TrbJ	n.p.	n.p.	1	0
gi\|496684685	Conjugal transfer protein TrbJ	n.p.	n.p.	14	14
gi\|330503729	Transposase IS4	n.p.	n.p.	91	80
gi\|496684687	Conjugal transfer protein TrbL	n.p.	n.p.	79	43
gi\|256367798	Transposase	n.p.	n.p.	15674	13666
gi\|496684681	Conjugal transfer protein TrbB	n.p.	n.p.	1	1
gi\|116050177	Transposase Tn4652	n.p.	n.p.	596	487
gi\|116050169	Recombinase	n.p.	n.p.	553	1182
gi\|152984407	TnpT protein	n.p.	n.p.	180	266
gi\|12698413	Transposase B	n.p.	n.p.	50	71
gi\|498341535	Integrase [Pseudomonas fragi]	n.p.	n.p.	453	462
gi\|489250021	Conjugal transfer protein TrbL	n.p.	n.p.	1	0
gi\|496684681	Conjugal transfer protein TrbB	n.p.	n.p.	1	2
gi\|496684682	Conjugal transfer protein TrbC	n.p.	n.p.	0	2
gi\|497207593	Integrase	n.p.	n.p.	3508	2908
gi\|489182829	Conjugative transfer protein TrbI	n.p.	n.p.	87	59
gi\|386063802	Conjugative transfer protein TrbG	n.p.	n.p.	25	15
gi\|386063802	Conjugative transfer protein TrbG	n.p.	n.p.	29	14
gi\|386063803	Conjugal transfer protein TrbF	n.p.	n.p.	22	3
gi\|386063804	Conjugal transfer protein TrbL	n.p.	n.p.	4	0
gi\|505461140	Shufflon-specific recombinase	n.p.	n.p.	339	328
gi\|497074269	Integrating conjugative element protein pill. pfgi-1	n.p.	n.p.	7	5
gi\|485834156	Transposase	n.p.	n.p.	632	428
gi\|446195994	Transposase	n.p.	n.p.	374	259
gi\|496684690	Conjugal transfer protein TrbI	n.p.	n.p.	14	9
gi\|496684690	Conjugal transfer protein TrbI	n.p.	n.p.	15	23
gi\|496684689	Conjugal transfer protein TrbG	n.p.	n.p.	8	14
gi\|495242526	Conjugal transfer protein TrbF	n.p.	n.p.	11	4
gi\|17547297	Conjugal transfer protein TrbL	n.p.	n.p.	1	0
gi\|3688518	Putative transposase	n.p.	n.p.	968	1026
gi\|491446843	Integrase	n.p.	n.p.	48	67
gi\|152987984	Conjugal transfer protein TrbD	n.p.	n.p.	2	5
gi\|493518183	Conjugal transfer protein TrbC	n.p.	n.p.	3	1
gi\|489201924	Conjugal transfer protein TrbB	n.p.	n.p.	3	1
gi\|330824177	Conjugal transfer protein TrbB	n.p.	n.p.	8	2
gi\|489194682	Conjugal transfer protein TraG	n.p.	n.p.	6	8
gi\|92112121	TnpA transposase	n.p.	n.p.	2857	1238
gi\|505462488	Transposase mutator family protein	n.p.	n.p.	483	234
gi\|472324076	Site-specific recombinase XerC	n.p.	n.p.	187	201
gi\|512557653	Transposase	55	51	57	30
gi\|489232756	Transposase component	7	8	13	5
gi\|495332841	Transposase	159	157	n.p.	n.p.
gi\|410693866	Transposase of ISThsp18. IS1182 family	2730	2154	n.p.	n.p.
gi\|392420288	Integrating conjugative element ParB	28	75	4	11
gi\|330824345	Integrating conjugative element protein	83	168	11	25
gi\|330824346	Integrase	31	67	36	24
gi\|512557590	Integrating conjugative element protein PilL. PFGI-1 class	8	6	n.p.	n.p.
gi\|490375364	Integrating conjugative element protein	15	35	n.p.	n.p.
gi\|339493279	Conjugal transfer protein TraG	109	96	n.p.	n.p.
gi\|498491306	Integrating conjugative element protein	6	2	9	9
gi\|497303938	Integrating conjugative element membrane protein	3	8	7	2
gi\|392420336	Conjugal transfer protein	8	9	n.p.	n.p.
gi\|330824396	Integrating conjugative element protein	26	22	n.p.	n.p.
gi\|330824398	Integrating conjugative element protein	13	18	n.p.	n.p.
gi\|497303929	Conjugative transfer ATPase	73	44	32	19
gi\|498491292	Integrating conjugative element protein	39	22	4	16
gi\|410471275	Phage-related integrase	442	603	n.p.	n.p.
PA3738	Integrase/recombinase XerD	177	231	122	275
gi\|489224124	Integrase	1148	1068	n.p.	n.p.
gi\|489224128	Integrase	1072	1106	n.p.	n.p.
gi\|498248343	Transposase	124	98	n.p.	n.p.
gi\|496762510	Conjugal transfer protein TrbJ	359	253	n.p.	n.p.
gi\|489229539	Conjugal transfer protein TrbL	417	610	n.p.	n.p.
gi\|489229536	Conjugal transfer protein TrbJ	479	538	n.p.	n.p.
gi\|489229532	Integrase	634	593	n.p.	n.p.
gi\|157420224	TnpA	0	0	1224	1485
gi\|489225709	Integrase	230	160	137	63
gi\|353334486	IncI1 plasmid conjugative transfer ATPase PilQ	241	176	84	59
gi\|148807320	Site-specific recombinase	348	392	n.p.	n.p.
gi\|152985999	Conjugal transfer protein TraG	565	416	207	167
gi\|490477548	Conjugal transfer protein	98	44	19	16
gi\|498491413	Conjugative transfer ATPase	510	328	218	122
gi\|386064726	Tyrosine recombinase XerC	431	444	237	196
gi\|386056644	Integrase	71	85	44	61
gi\|446985433	Integrase	109	80	172	178
gi\|163856484	Transposase	115	68	n.p.	n.p.
gi\|496684672	Conjugal transfer protein TraF peptidase	9	2	n.p.	n.p.
gi\|187940137	Phage integrase family protein	187	135	n.p.	n.p.
gi\|121595234	Conjugal transfer coupling protein TraG	36	26	97	110
gi\|386063809	Conjugal transfer protein TrbB	14	12	12	21
gi\|492686504	Conjugal transfer protein Trbc	5	4	n.p.	n.p.
gi\|387129929	Conjugal transfer protein TrbD	2	2	6	3
gi\|497202778	Conjugal transfer protein TrbE	55	58	47	31
gi\|489201921	Conjugal transfer protein TrbJ	47	28	11	7
gi\|491446728	Conjugal transfer protein TrbL	869	474	16	8
gi\|152984687	Transposase	709	388	n.p.	n.p.
gi\|489221152	Integrase	645	569	n.p.	n.p.
gi\|489184774	Integrase	352	296	n.p.	n.p.
gi\|512563762	P-type conjugative transfer protein TrbL	15	3	n.p.	n.p.
gi\|94310290	conjugal transfer protein TrbF	17	22	23	4
gi\|512587667	P-type conjugative transfer protein TrbG	31	31	20	14
gi\|489200991	Conjugative transfer protein TrbI	76	67	38	55
gi\|490275574	IS5 Transposase. Partial	796	610	n.p.	n.p.
gi\|218891103	Integrase	362	278	111	97
gi\|392983596	Integrase	3054	1923	476	858
gi\|489349534	Transposase IS3	327	133	n.p.	n.p.
gi\|187939496	Transposase	453	382	560	641
PA1534	Recombination protein RecR	390	500	231	278
PA5280	Site-specific recombinase Sss	320	320	112	113
gi\|148807435	Phage integrase	115	87	n.p.	n.p.
gi\|148807434	Phage integrase	371	303	n.p.	n.p.
gi\|148807431	Site-specific recombinase	598	366	488	488
gi\|489214965	Integrase	999	937	226	488
gi\|148807465	Phage integrase	121	139	n.p.	n.p.
gi\|392420677	Transposase IS5	420	266	n.p.	n.p.
gi\|94311234	Integrase	83	88	12	4
gi\|493264878	Conjugal transfer protein TraG	81	100	101	58
gi\|489180720	Conjugal transfer protein	6	1	2	2
gi\|386717922	Conjugal transfer protein	76	77	54	53
gi\|489215831	Integrase	347	368	1107	3025
gi\|498490909	Integrating conjugative element relaxase. PFGI-1 class	212	126	181	129
gi\|493264934	Transposase IS204	332	292	n.p.	n.p.
gi\|493265821	Transposase	303	257	n.p.	n.p.
gi\|489180871	Integrase	521	582	181	240

n.p. – gene sequence is not present in this strain.

Identifiers state PAO1 gene IDs or RefSeq accession where applicable. Transcriptional activity in tap water (T) and waste water (W) was normalized for the two strains independently and is shown as normalized pseudocounts.