Table 2.
List of getnes highly induced (>16-fold) by exogenous melatonin pre-treatment in bermudagrass
| Seq_ID | logFC | P-value | FDR | Putative annoation in Arabdopsis | E-valuea | Putative annoation in rice | E-valuea |
|---|---|---|---|---|---|---|---|
| comp58508_c2_seq12 | 8.47 | 5.35E-247 | 2.50E-245 | CBF4, DREB1D | 2e-07 | DRE | 1e-35 |
| comp58508_c2_seq7 | 7.49 | 0 | 0 | DREB1A, CBF3 | 9e-15 | DRE | 2e-25 |
| comp57631_c0_seq7 | 2.98 | 0 | 0 | DREB2A | 2e-23 | AP2 domain containing protein | 2e-62 |
| comp55697_c1_seq4 | 4.92 | 0 | 0 | DNA-binding protein | 1e-23 | AP2 domain containing protein | 6e-34 |
| comp49674_c0_seq1 | 4.49 | 0 | 0 | HRE1 | 1e-14 | AP2 | 1e-44 |
| comp52672_c0_seq8 | 5.57 | 0 | 0 | ERD15 | 5e-17 | Expressed protein | 2e-46 |
| comp51935_c1_seq1 | 5.89 | 0 | 0 | Cold-regulated gene 27 | 3e-13 | Expressed protein | 4e-74 |
| comp59530_c3_seq1 | 5.50 | 4.31E-51 | 4.22E-50 | HSFA6B | 5e-61 | HSF | 4e-133 |
| comp51719_c2_seq14 | 4.61 | 0 | 0 | HSFC1 | 1e-57 | HSF | 1e-113 |
| comp56606_c0_seq9 | 5.48 | 9.30E-52 | 9.25E-51 | HSP20-like | 2e-17 | hsp20 | 3e-27 |
| comp60859_c0_seq13 | 5.13 | 1.51E-14 | 5.65E-14 | SLT1 | HSP20-like | 4e-172 | SLT1 protein | 0 |
| comp53718_c0_seq3 | 6.51 | 0 | 0 | DnaJ | 2e-36 | Heat shock protein DnaJ | 1e-78 |
| comp51393_c1_seq14 | 5.36 | 2.40E-58 | 2.67E-57 | DnaJ | 6e-16 | Heat shock protein DnaJ | 1e-36 |
| comp23443_c0_seq1 | 7.89 | 6.84E-42 | 5.67E-41 | DNAJ heat shock protein | 1e-35 | Expressed protein | 4e-61 |
| comp53904_c0_seq1 | 4.32 | 0 | 0 | WRKY25 | 4e-35 | WRKY53 | 4e-51 |
| comp55751_c0_seq1 | 6.18 | 0 | 0 | WRKY40 | 2e-53 | WRKY71 | 1e-132 |
| comp55960_c0_seq3 | 4.57 | 1.84E-212 | 7.05E-211 | WRKY46 | 4e-35 | WRKY74 | 1e-93 |
| comp54790_c0_seq12 | 5.79 | 1.72E-246 | 7.99E-245 | WRKY51 | 1e-31 | WRKY67 | 6e-37 |
| comp57307_c2_seq3 | 5.57 | 0 | 0 | AZF1 | 8e-12 | C2H2 zinc finger protein | 1e-23 |
| comp54697_c5_seq1 | 4.22 | 1.63E-163 | 4.59E-162 | ATL6 | 3e-42 | Zinc finger, C3HC4 type | 1e-55 |
| comp57307_c1_seq2 | 5.61 | 0 | 0 | STZ, ZAT10 | 4e-25 | C2H2 zinc finger protein | 3e-36 |
| comp55694_c0_seq3 | 5.27 | 0 | 0 | NIP2 | 1e-51 | RING-H2 finger protein ATL2B | 2e-90 |
| comp57199_c1_seq6 | 4.07 | 1.01E-155 | 2.69E-154 | AtMYB78 | 6e-14 | MYB | 2e-14 |
| comp60805_c1_seq6 | 6.20 | 0 | 0 | RVE1 | 5e-36 | MYB | 7e-97 |
| comp60805_c1_seq4 | 5.70 | 0 | 0 | LHY | 2e-13 | MYB | 2e-92 |
| comp58066_c0_seq2 | 4.59 | 8.75E-312 | 5.22E-310 | BHLH | 3e-38 | Ethylene-responsive protein | 1e-95 |
| comp54812_c1_seq1 | 6.33 | 0 | 0 | BHLH92 | 3e-19 | BHLH | 2e-79 |
| comp56171_c3_seq1 | 5.02 | 0 | 0 | anac032, NAC032 | 6e-07 | NAC | 3e-54 |
| comp54298_c0_seq8 | 4.56 | 0 | 0 | AF2 | 7e-73 | NAC | 2e-145 |
| comp54697_c3_seq1 | 4.60 | 2.23E-132 | 5.10E-131 | RING/U-box protein | 1e-28 | Zinc finger | 4e-49 |
| comp53888_c2_seq1 | 4.15 | 9.66E-50 | 9.21E-49 | CMPG2 | 1e-15 | U-box | 7e-20 |
| comp53888_c0_seq1 | 4.74 | 1.02E-122 | 2.15E-121 | PUB29 | 2e-31 | U-box | 9e-90 |
| comp48740_c0_seq1 | 6.07 | 0 | 0 | Calcium-binding EF-hand protein | 3e-35 | EF hand family protein | 8e-68 |
| comp48880_c0_seq1 | 5.33 | 0 | 0 | Calcium-binding EF-hand protein | 1e-28 | OsCML31 | 4e-60 |
| comp61173_c2_seq4 | 5.64 | 0 | 0 | Calcium-binding protein | 3e-34 | OsCML10 | 1e-57 |
| comp42867_c0_seq1 | 5.25 | 6.59E-310 | 3.93E-308 | Calcium-binding protein | 1e-43 | OsCML14 | 7e-72 |
| comp50275_c0_seq5 | 4.36 | 1.47E-284 | 7.97E-283 | Calcium-binding protein | 5e-25 | EF hand | 1e-40 |
| comp60797_c0_seq1 | 5.12 | 0 | 0 | Calmodulin-binding protein | 2e-160 | Calmodulin-binding protein | 0 |
| comp55169_c0_seq2 | 4.50 | 0 | 0 | Calmodulin-binding protein | 8e-85 | Calmodulin-binding protein | 3e-145 |
| comp51845_c0_seq1 | 4.67 | 0 | 0 | CML43 | 3e-39 | OsCML27 | 6e-78 |
| comp55740_c0_seq1 | 4.20 | 0 | 0 | TCH2, CML24 | 2e-38 | OsCML16 | 1e-80 |
| comp57565_c0_seq8 | 9.08 | 7.50E-220 | 3.05E-218 | CKA1 | 0 | Casein kinase II | 0 |
| comp54827_c0_seq1 | 6.78 | 6.62E-48 | 6.09E-47 | Kinase | 2e-20 | Kinase | 3e-26 |
| comp55548_c0_seq1 | 4.39 | 0 | 0 | Kinase | 6e-148 | Phosphotransferase | 0 |
| comp55703_c1_seq1 | 4.29 | 7.18E-159 | 1.96E-157 | Kinase | 7e-65 | Tyrosine protein kinase | 2e-124 |
| comp60546_c0_seq1 | 4.11 | 1.75E-75 | 2.41E-74 | Kinase | 0 | Leucine-rich repeat protein | 0 |
| comp54489_c2_seq1 | 5.52 | 3.60E-185 | 1.19E-183 | JMJD5 | 8e-139 | jmjC protein 5 | 9e-146 |
| comp48478_c1_seq1 | 4.45 | 1.09E-76 | 1.52E-75 | HDA18 | 2e-64 | Histone deacetylase | 2e-71 |
| comp57103_c1_seq1 | 4.45 | 0 | 0 | ERF-1 | 3e-22 | ERF | 1e-43 |
| comp51949_c0_seq2 | 4.49 | 0 | 0 | JAZ2, TIFY10B | 2e-10 | ZIM protein | 8e-31 |
| comp59913_c1_seq8 | 7.52 | 0 | 0 | CYP707A1 | 8e-50 | Cytochrome P450 | 1e-64 |
| comp50455_c0_seq1 | 3.42 | 0 | 0 | PYL5, RCAR8 | 7e-55 | Cyclase/dehydrase | 1e-87 |
| comp55459_c2_seq1 | 4.20 | 0 | 0 | PP2C | 6e-101 | PP2C | 1e-164 |
| comp55059_c0_seq4 | 4.33 | 2.77E-269 | 1.43E-267 | SHY2, IAA3 | 2e-47 | OsIAA24 | 2e-64 |
| comp56859_c0_seq6 | 5.51 | 3.14E-169 | 9.21E-168 | Alcohol dehydrogenase | 8e-100 | Dehydrogenase | 9e-100 |
| comp55475_c1_seq1 | 4.41 | 0 | 0 | WCRKC thioredoxin 1 | 4e-45 | Thioredoxin | 4e-80 |
| comp49522_c0_seq2 | 4.02 | 9.96E-36 | 7.38E-35 | Oxidoreductase | 2e-88 | Dehydrogenase | 4e-136 |
| comp57222_c0_seq2 | 5.09 | 0 | 0 | FMO1 | 2e-91 | Monooxygenase | 0 |
| comp56296_c0_seq6 | 5.02 | 2.03E-49 | 1.92E-48 | Copper transport protein | 2e-09 | Heavy metal-associated protein | 3e-26 |
| comp46851_c0_seq1 | 4.92 | 5.38E-117 | 1.07E-115 | Heavy metal transport | 1e-06 | Expressed protein | 4e-21 |
| comp51430_c0_seq1 | 4.45 | 7.94E-278 | 4.22E-276 | Heavy metal transport | 1e-15 | Heavy metal-associated protein | 3e-41 |
Twenty-one-day-old bermuagrass plants in pots were irrigated with water or 20 μM melatonin for 7 d, then the 28-day-old plants (with and without 7 d of pre-treatment) were used for transcriptomic analysis.
logFC, log2 fold change; FDR, false discovery rate.
eE-value, expected value for putative annotation in Arabidopsis or rice.