| TCGA (The Cancer Genome Project) |
http://cancergenome.nih.gov/ |
| TCGA performs comprehensive genomic characterisation and analysis of multiple cancer types to drive the understanding of the molecular basis of cancer |
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| ICGC (International Cancer Genome Consortium) |
http://icgc.org/ |
| ICGC is focused on a comprehensive understanding of the genomic abnormalities in cancer |
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| SU2C (Stand Up to Cancer) |
http://www.standup2cancer.org/ |
| SU2C aims to drive innovative cancer research through interdisciplinary science |
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| LINCS (Library of Integrated Network-based Cellular Signatures) |
http://www.lincsproject.org/ |
| LINCS aims to enhance a network-based understanding of biology, cataloging changes in gene expression and other cellular processes in response to perturbations |
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| Sanger Institute databases |
http://www.sanger.ac.uk/resources/databases |
| The institute has developed a suite of databases to manage and interpret large-scale data |
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| cBioPortal for Cancer Genomics |
http://www.cbioportal.org/public-portal/ |
| CBIO is a platform to visualise, analyse and download large scale genomic data sets |
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| The Human Protein Atlas |
http://www.proteinatlas.org/ |
| The atlas aims to explore the human proteome systematically through antibody-based proteomics |
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| The Cancer proteome atlas |
http://app1.bioinformatics.mdanderson.org/tcpa/_design/basic/index.html |
| The atlas aims to provide a comprehensive resource for accessing, visualising, and analysing cancer functional proteomics |
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| TCGA data portal |
https://tcga-data.nci.nih.gov/tcga/ |
| A platform for researchers to search, download, and analyse data sets generated by TCGA |
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| Cytoscape |
http://www.cytoscape.org/ |
| Cytoscope is an open source platform for visualising complex networks and integrating the networks with other data types |
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| Vcell |
http://www.nrcam.uchc.edu/ |
| The Virtual cell is a computational platform to model and simulate cell biology |
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| COPASI |
http://www.copasi.org/tiki-view_articles.php |
| COPASI is a platform to simulate and analyse networks and their dynamics |
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| Netwalker |
https://netwalkersuite.org/ |
| Netwalker is a platform to assist in functional analyses of large-scale genomics datasets focused on molecular networks |
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| SageBio |
http://sagebase.org/ |
| SageBio creates platforms to enable collaboration on data and data sharing. |
| They also run challenges on complex biomedical problems |
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| STRING |
http://string-db.org/ |
| String is a database of known and predicted physical and functional protein interactions |
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| GeneCards |
http://www.genecards.org/ |
| GeneCards provides a database of human genes with comprehensive information on all known and predicted human genes. |
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| Pathway Commons |
http://www.pathwaycommons.org/about/ |
| Pathway Commons is a portal to access biological pathway information collected from public pathway databases |
| DREAM (Dialogue for Reverse Engineering Assessments and Methods) |
http://www.the-dream-project.org/ |
| DREAM aims to be a catalyser for the interaction between experiment and theory focused on cellular network inference and quantitative model building |
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| ICBP (Integrated Cancer Biology Program) |
http://icbp.nci.nih.gov/ |
| ICBP develops and implements computational models of cancer processes |
