Table 3.
GO categories significantly associated with particular E -type expression profiles
| Type | GO accession | Description | % in group | % BG b | FDR |
|---|---|---|---|---|---|
| Down-early (1400a) | GO:0015979 | photosynthesis | 3.29 | 0.63 | 1.8E-14 |
| GO:0055114 | oxidation reduction | 13.86 | 8.71 | 2.3E-07 | |
| GO:0006629 | lipid metabolic process | 6.57 | 3.45 | 6.5E-06 | |
| GO:0018130 | heterocycle biosynthetic process | 1.57 | 0.47 | 5.0E-04 | |
| GO:0034641 | cellular nitrogen compound metabolic process | 4.36 | 2.30 | 5.9E-04 | |
| GO:0045454 | cell redox homeostasis | 2.14 | 0.83 | 8.5E-04 | |
| Down-linear (1054) | GO:0015979 | photosynthesis | 3.51 | 0.63 | 3.0E-12 |
| GO:0006520 | cellular amino acid metabolic process | 4.08 | 1.60 | 2.5E-05 | |
| GO:0043039 | tRNA aminoacylation | 1.52 | 0.35 | 3.0E-04 | |
| Down-late (1213) | GO:0006412 | translation | 20.86 | 3.21 | 4.5E-111 |
| GO:0034660 | ncRNA metabolic process | 3.30 | 0.85 | 9.0E-10 | |
| GO:0044106 | cellular amine metabolic process | 4.04 | 1.66 | 3.9E-06 | |
| GO:0015684 | ferrous iron transport | 0.74 | 0.12 | 2.2E-03 | |
| Up-early (952) | GO:0006886 | intracellular protein transport | 3.15 | 0.96 | 3.2E-05 |
| Up-linear (1494) | GO:0044257 | cellular protein catabolic process | 2.61 | 0.61 | 7.3E-10 |
| GO:0016236 | macroautophagy | 0.60 | 0.05 | 4.7E-05 | |
| GO:0015991 | ATP hydrolysis coupled proton transport | 1.07 | 0.21 | 5.4E-05 | |
| GO:0007264 | small GTPase mediated signal transduction | 2.21 | 1.02 | 4.2E-03 | |
| Up-late (827) | No significant enrichment | ||||
| Peak (448) | No significant enrichment | ||||
| Trough (432) | GO:0006333 | chromatin assembly or disassembly | 2.23 | 0.37 | 1.6E-03 |
aTotal number of genes within a category that have a GO annotation.
bBackground model (BG) comprises all 29,641 soybean genes with a GO annotation.