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. 2014 Jun 6;4:11. doi: 10.1186/2045-9912-4-11

Table 1.

Primer sequence, product length and characteristics

Transcript Sequence Orientation Annealing temperature (°C) Transcript size (base pairs) Melting point (°C) GeneBank_ID
Cyclophilin
GGCAAATGCTGGACCAAACAC
Sense
60
196
82
NM_017101.1
 
TTAGAGTTGTCCACAGTCGGAGATG
Antisense
 
 
Tumor nekrose faktor alpha
CTCCCAGAAAAGCAAGCAACC
Sense
57
210
85
NM_012675.3
(TNFα)
CGAGCAGGAATGAGAAGAGG
Antisense
 
 
Interleukin-1β
CTGTGACTCGTGGGATGATG
Sense
60
210
81
NM_031512.2
(IL-1β)
GGGATTTTGTCGTTGCTTGT
Antisense
 
 
Interleukin-6
CCGGAGAGGAGACCTCACAG
Sense
60
161
78
NM_012589.1
(IL-6)
ACAGTGCATCATCGCTGTTC
Antisense
 
 
Chemokine (C-C) ligand 2
CCAGAAACCAGCCAACTCTC
Sense
59
192
83
NM_031530.1
CCL2
CCGACTCATTGGGATCATCT
Antisense
 
 
Matrix metalloproteinase-9
CCACCGAGCTATCCACTCAT
Sense
60
180
79
NM_031055.1
MMP-9
GTCCGGTTTCAGCATGTTTT
Antisense
 
 
Hypoxia inducible factor 1
TCAAGTCAGCAACGTGGAAG
Sense
60
198
81
NM_024359.1
alpha (HIF-1α)
TATCGAGGCTGTGTCGACTG
Antisense
 
 
Chemokine (C-C) ligand 5
TGCCCACGTGAAGGAGTATTTTTA
Sense
60
81
78
NM_031116.3
(CCL5)
TGGCGGTTCCTTCGAGTGACAA
Antisense
 
 
Transforming growth factor β (TGF-β)
GGGACTCTCCACCTGCAAGAC
Sense
63
393
88
NM_012578.2
CTCTGCAGGCGCAGCTCTG
Antisense
 
 
Nerve growth factor
GAAACGGAGACTCCGTTCACC
Sense
60
100
82
NM_001067130.1
(NGF)
GATTGTACCATGGGCCTGGA
Antisense
 
 
Vascular endothelial growth factor α (VEGFα)
CCTGGTGGACATCTTCCAGGAGTACC
Sense
60
196
84
NM_031836.2
GAAGCTCATCTCTCCTATGTGCT
Antisense
 
 
Inducible NO-synthetase
CACCTTGGAGTTCACCCAGT
Sense
59
179
85
NM_012611.3
(iNOS)
ACCACTCGTACTTGGGATGC
Antisense
 
 
CD3
AGAACTGCATGGAGGTGGAC
Sense
60
232
84
NM_001108140.1
 
TTTCGGATGGGCTCATAGTC
Antisense
 
 
CD11b
TTACCGGACTGTGTGGACAA
Sense
62
219
82
NM_012711.1
 
AGTCTCCCACCACCAAAGTG
Antisense
 
 
2’3’-Cyclic nucleotide 3’ phosphodiesterase (CNP)
TGGCGAAGAAGATGGAAGTCA
Sense
60
257
82
M18630.1
GTGGGTGAAGGAACTGATGGTT
Antisense
 
 
Glial fibrillary acid protein
AGAAAACCGCATCACCATT
Sense
60
188
83
NM_017009.2
(GFAP)
GCACACCTCACATCACATCC
Antisense
 
 
Insulin-like growth factor 1
TGATCTGAGGAGGCTGGAGATGTA
Sense
59
95
82 NM_178866.4
IGF-1 CTTCTGAGTCTTGGGCATGTCA Antisense    

A full summary of the primer sequences employed for gene expression analysis plus their characteristics is given in Table 1.