Table 1.
Transcript | Sequence | Orientation | Annealing temperature (°C) | Transcript size (base pairs) | Melting point (°C) | GeneBank_ID |
---|---|---|---|---|---|---|
Cyclophilin |
GGCAAATGCTGGACCAAACAC |
Sense |
60 |
196 |
82 |
NM_017101.1 |
|
TTAGAGTTGTCCACAGTCGGAGATG |
Antisense |
|
|
||
Tumor nekrose faktor alpha |
CTCCCAGAAAAGCAAGCAACC |
Sense |
57 |
210 |
85 |
NM_012675.3 |
(TNFα) |
CGAGCAGGAATGAGAAGAGG |
Antisense |
|
|
||
Interleukin-1β |
CTGTGACTCGTGGGATGATG |
Sense |
60 |
210 |
81 |
NM_031512.2 |
(IL-1β) |
GGGATTTTGTCGTTGCTTGT |
Antisense |
|
|
||
Interleukin-6 |
CCGGAGAGGAGACCTCACAG |
Sense |
60 |
161 |
78 |
NM_012589.1 |
(IL-6) |
ACAGTGCATCATCGCTGTTC |
Antisense |
|
|
||
Chemokine (C-C) ligand 2 |
CCAGAAACCAGCCAACTCTC |
Sense |
59 |
192 |
83 |
NM_031530.1 |
CCL2 |
CCGACTCATTGGGATCATCT |
Antisense |
|
|
||
Matrix metalloproteinase-9 |
CCACCGAGCTATCCACTCAT |
Sense |
60 |
180 |
79 |
NM_031055.1 |
MMP-9 |
GTCCGGTTTCAGCATGTTTT |
Antisense |
|
|
||
Hypoxia inducible factor 1 |
TCAAGTCAGCAACGTGGAAG |
Sense |
60 |
198 |
81 |
NM_024359.1 |
alpha (HIF-1α) |
TATCGAGGCTGTGTCGACTG |
Antisense |
|
|
||
Chemokine (C-C) ligand 5 |
TGCCCACGTGAAGGAGTATTTTTA |
Sense |
60 |
81 |
78 |
NM_031116.3 |
(CCL5) |
TGGCGGTTCCTTCGAGTGACAA |
Antisense |
|
|
||
Transforming growth factor β (TGF-β) |
GGGACTCTCCACCTGCAAGAC |
Sense |
63 |
393 |
88 |
NM_012578.2 |
CTCTGCAGGCGCAGCTCTG |
Antisense |
|
|
|||
Nerve growth factor |
GAAACGGAGACTCCGTTCACC |
Sense |
60 |
100 |
82 |
NM_001067130.1 |
(NGF) |
GATTGTACCATGGGCCTGGA |
Antisense |
|
|
||
Vascular endothelial growth factor α (VEGFα) |
CCTGGTGGACATCTTCCAGGAGTACC |
Sense |
60 |
196 |
84 |
NM_031836.2 |
GAAGCTCATCTCTCCTATGTGCT |
Antisense |
|
|
|||
Inducible NO-synthetase |
CACCTTGGAGTTCACCCAGT |
Sense |
59 |
179 |
85 |
NM_012611.3 |
(iNOS) |
ACCACTCGTACTTGGGATGC |
Antisense |
|
|
||
CD3 |
AGAACTGCATGGAGGTGGAC |
Sense |
60 |
232 |
84 |
NM_001108140.1 |
|
TTTCGGATGGGCTCATAGTC |
Antisense |
|
|
||
CD11b |
TTACCGGACTGTGTGGACAA |
Sense |
62 |
219 |
82 |
NM_012711.1 |
|
AGTCTCCCACCACCAAAGTG |
Antisense |
|
|
||
2’3’-Cyclic nucleotide 3’ phosphodiesterase (CNP) |
TGGCGAAGAAGATGGAAGTCA |
Sense |
60 |
257 |
82 |
M18630.1 |
GTGGGTGAAGGAACTGATGGTT |
Antisense |
|
|
|||
Glial fibrillary acid protein |
AGAAAACCGCATCACCATT |
Sense |
60 |
188 |
83 |
NM_017009.2 |
(GFAP) |
GCACACCTCACATCACATCC |
Antisense |
|
|
||
Insulin-like growth factor 1 |
TGATCTGAGGAGGCTGGAGATGTA |
Sense |
59 |
95 |
82 | NM_178866.4 |
IGF-1 | CTTCTGAGTCTTGGGCATGTCA | Antisense |
A full summary of the primer sequences employed for gene expression analysis plus their characteristics is given in Table 1.