Table I.
Transcription factors, FFRPs, identified as coded in the genome of Pyrococcus sp. OT3
| ID | Fuller ID* | Orthologues from other species | Crystal 3D | EM analysis | Ligand | Binding DNA-sequences |
|---|---|---|---|---|---|---|
| DM1 | pot1216151 | none | + | + | isoleucine | N.A. |
| DM2 | pot0300646 | none | N.D. | N.E. | N.D. | N.A. |
| DM3 | pot0175330 | none | N.D. | N.E. | N.D. | N.A. |
| FL1 | pot0828564 | none | N.D. | N.E. | N.D. | N.D. |
| FL2 | pot0836696 | none | N.D. | N.E. | N.D. | N.D. |
| FL3 | pot0868477 | none | N.D. | N.E. | N.D. | N.D. |
| FL4 | pot1613368 | none | N.D. | N.E. | N.D. | ATGAA** |
| FL5 | pot1664679 | none | N.D. | N.E. | N.D. | N.D. |
| FL6 | pot1735659 | none | N.D. | N.E. | N.D. | N.D. |
| FL7 | pot0008824 | none | N.D. | N.E. | N.D. | N.D. |
| FL8 | pot0123002 | none | N.D. | N.E. | N.D. | N.D. |
| FL9 | pot0301583 | none | N.D. | N.E. | N.D. | N.D. |
| FL10 | pot0377090 | LrpA from P. f. | + | − | N.D. | TTCG2) |
| FL11 | pot0434017 | none | + | + | (glutamine) | TGAAA6) |
| FL12 | pot0258936 | Phr from P. f. | − | − | N.D. | TAACC4) |
| FL13 | pot0846474 | TrmB from T. l. | − | − | trehalose/maltose | ATACT4) |
N.A.: not applicable since these do not have a DBD. N.D.: not determined. N.E.: not examined. P. f.: Pyrococcus furiosus. T. l.: Thermococcus litralis.
*
pot (Pyrococcus sp. OT3) followed by stop codon positions in the genome (http://www.aist.go.jp/RIODB/archaic).
**
this study.