Table 3.
Nucleotide content and gene count levels of the genome
| Attribute | Value | % of total a |
|---|---|---|
| Genome size (bp) |
4,703,886 |
100 |
| DNA coding (bp) |
4,075,859 |
86.7 |
| DNA G + C (bp) |
1,763,498 |
37.5 |
| DNA scaffolds |
56 |
100 |
| Total genes |
4,986 |
100 |
| Protein coding genes |
4,809 |
96.5 |
| RNA genes |
177 |
3.6 |
| Pseudo genes |
0 |
0 |
| Genes in internal clusters |
3,448 |
69.1 |
| Genes with function prediction |
3,755 |
75.3 |
| Genes assigned to COGs |
2,809 |
56.3 |
| Genes with Pfam domains |
3,890 |
78.0 |
| Genes with signal peptides |
182 |
3.7 |
| Genes with transmembrane helices |
1,233 |
24.7 |
| CRISPR repeats | 4 | - |
a)The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.