Table 2.
Differences in the nucleotide sequences (110 sites) of the cox 1 gene among Onchocerca species
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Onchocerca dewittei japonica (LC008531, Case 1 in the present study) | 1 | 0 | 0 | 6 | 6 | 7 | 8 | 8 | 8 | 9 | 9 | 10 | 10 | |
| 2 | Onchocerca dewittei japonica (LC008149, Case 2 in the present study) | 0.9 | 1 | 1 | 5 | 5 | 6 | 7 | 7 | 7 | 8 | 8 | 9 | 9 | |
| 3 | Onchocerca dewittei japonica AB604943, Hiroshima 1 | 0 | 0.9 | 0 | 6 | 6 | 7 | 8 | 8 | 8 | 9 | 9 | 10 | 10 | |
| 4 | Onchocerca dewittei japonica AB518689 | 0 | 0.9 | 0 | 6 | 6 | 7 | 8 | 8 | 8 | 9 | 9 | 10 | 10 | |
| 5 | Onchocerca ochengi AJ271618 | 5.5 | 4.5 | 5.5 | 5.5 | 0 | 3 | 3 | 4 | 8 | 3 | 5 | 8 | 8 | |
| 6 | Onchocerca volvulus AF015193 | 5.5 | 4.5 | 5.5 | 5.5 | 0 | 3 | 3 | 4 | 8 | 3 | 5 | 8 | 8 | |
| 7 | Onchocerca skrjabini AM749269 | 6.4 | 5.5 | 6.4 | 6.4 | 2.7 | 2.7 | 4 | 1 | 7 | 4 | 6 | 7 | 7 | |
| 8 | Onchocerca eberhardi AM749268 | 7.3 | 6.4 | 7.3 | 7.3 | 2.7 | 2.7 | 3.6 | 5 | 10 | 6 | 8 | 11 | 7 | |
| 9 | Onchocerca gibsoni AJ271616 | 7.3 | 6.4 | 7.3 | 7.3 | 3.6 | 3.6 | 9.1 | 4.5 | 7 | 5 | 6 | 8 | 6 | |
| 10 | Onchocerca lupi EF521410 | 7.3 | 6.4 | 7.3 | 7.3 | 7.3 | 7.3 | 6.4 | 9.1 | 6.4 | 7 | 7 | 10 | 13 | |
| 11 | Onchocerca gutturosa AJ271617 | 8.2 | 7.3 | 8.2 | 8.2 | 2.7 | 2.7 | 3.6 | 5.5 | 4.5 | 6.4 | 4 | 7 | 11 | |
| 12 | Onchocerca suzukii AM749275 | 8.2 | 7.3 | 8.2 | 8.2 | 4.5 | 4.5 | 5.5 | 7.3 | 5.5 | 6.4 | 3.6 | 7 | 10 | |
| 13 | Onchocerca sp. Type A AB518876* | 9.1 | 8.2 | 9.1 | 9.1 | 7.3 | 7.3 | 6.4 | 10.0 | 7.3 | 9.1 | 6.4 | 6.4 | 11 | |
| 14 | Onchocerca sp. wild boar AB518693* | 9.1 | 8.2 | 9.1 | 9.1 | 7.3 | 7.3 | 6.4 | 6.4 | 5.5 | 11.8 | 10.0 | 9.1 | 10.0 |
Values above the diagonal are the numbers of nucleotide differences, and those below the diagonal are the percentages of nucleotide differences. *See text.