Table 2.
Top 50 RNA targets of heterogeneous nuclear ribonucleoprotein M in Hep3B cells
| Rank | Gene title | Gene symbol |
| 1 | Apolipoprotein E | APOE |
| 2 | Albumin | ALB |
| 3 | RNA, 28S ribosomal 1 | RN28S1 |
| 4 | PQ loop repeat containing 2 | PQLC2 |
| 5 | Zinc finger protein 865 | ZNF865 |
| 6 | Unknown | A_33_P3396434 |
| 7 | lincRNA | XLOC_l2_004940 |
| 8 | CD63 molecule | CD63 |
| 9 | Eukaryotic translation elongation factor 1 alpha 1 | EEF1A1 |
| 10 | G protein-coupled receptor 155 | GPR155 |
| 11 | Family with sequence similarity 74, member A4 | FAM74A4 |
| 12 | LOC284600 | ENST00000448179 |
| 13 | LOC100506453 | ENST00000381105 |
| 14 | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G | ATP5L |
| 15 | Unknown | A_33_P3370515 |
| 16 | Proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 | PSMD2 |
| 17 | Ribosomal protein L23 | RPL23 |
| 18 | Proteasome (prosome, macropain) subunit, beta type, 1 | PSMB1 |
| 19 | Arsenic (+3 oxidation state) methyltransferase | AS3MT |
| 20 | Heat shock 60 kDa protein 1 (chaperonin) | HSPD1 |
| 21 | H2A histone family, member V | H2AFV |
| 22 | lincRNA | XLOC_l2_015885 |
| 23 | Fucosyltransferase 6 (alpha (1,3) fucosyltransferase) | FUT6 |
| 24 | Cytochrome P450, family 2, subfamily W, polypeptide 1 | CYP2W1 |
| 25 | Unknown | A_33_P3275826 |
| 26 | Microtubule-associated protein 4 | MAP4 |
| 27 | lincRNA | XLOC_l2_002910 |
| 28 | X-ray repair complementing defective repair in Chinese hamster cells 6 | XRCC6 |
| 29 | Solute carrier family 16, member 12 (monocarboxylic acid transporter 12) | SLC16A12 |
| 30 | Actin, beta | ACTB |
| 31 | Unknown | A_33_P3315763 |
| 32 | Mitochondrial carrier 1 | MTCH1 |
| 33 | Stromal cell-derived factor 2-like 1 | SDF2L1 |
| 34 | Chromosome 19 open reading frame 10 | C19orf10 |
| 35 | Kinesin family member 1C | KIF1C |
| 36 | Fibrinogen-like 1 | FGL1 |
| 37 | RAN, member RAS oncogene family | RAN |
| 38 | Unknown | ENST00000400768 |
| 39 | Homer homolog 3 (Drosophila) | HOMER3 |
| 40 | HscB iron-sulfur cluster co-chaperone homolog (E. coli) | HSCB |
| 41 | Canopy 2 homolog (zebrafish) | CNPY2 |
| 42 | Thymidine phosphorylase | TYMP |
| 43 | F11 receptor | F11R |
| 44 | Mastermind-like 1 (Drosophila) | MAML1 |
| 45 | Electron-transfer-flavoprotein, beta polypeptide | ETFB |
| 46 | Heterogeneous nuclear ribonucleoprotein A1 | HNRNPA1 |
| 47 | Alpha-1-microglobulin/bikunin precursor | AMBP |
| 48 | Calreticulin | CALR |
| 49 | Solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 | SLC25A3 |
| 50 | Alpha-2-HS-glycoprotein | AHSG |
RNA-hnRNPM complexes were co-immunoprecipitated with anti-heterogeneous nuclear ribonucleoprotein M antibody bound to protein G-magnetic beads, and RNAs were isolated and identified by microarray analysis.