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. 2015 Feb 10;81(5):1585–1593. doi: 10.1128/AEM.03082-14

TABLE 1.

Geometric mean recoveries and geometric standard deviations of PV and PV RNA spiked into samples determined by RT-qPCR

Sample Sample type Spiked PV viriona
Spiked PV RNAb (nondilution)
Nondilution
100-fold dilution
GMc (%) GSDc GM (%) GSD GM (%) GSD
Blank (Milli-Q) Raw 100 0.08
Filt 67 0.04
Acid 70 0.05
Conc 100 0.03
Wa-HA Raw 0.030 0.14 56 0.05
Filt 91 0.18
Acid 106 0.08
Conc 0.10 0.39 33 0.44
Ald-HA Raw <0.0001d 53 0.28
Filt 110 0.17
Acid 130 0.26
Conc 0.00078 0.14 73 0.05
IH-HA Raw 130 0.26 <0.0001 -
Filt 150 0.19 5.2 0.22
Acid 160 0.14
Conc 130 0.24
R1 Raw 89
Conc 9.9 62
R2 Raw 140
Conc <0.0001 150
R3 Raw 110
Conc <0.0001 77
a

PV virions were spiked into the samples just before the RNA extraction step.

b

Extracted PV RNA was spiked into the samples to a final concentration of 4.5 × 104 GC/μl and quantified without an RNA extraction step.

c

GM and GSD, geometric mean and geometric standard deviation, respectively (n = 3 for blank and humic acid samples; n = 1 for river water samples; GSD for river water samples cannot be shown).

d

<0.0001% indicates that spiked PV or PV RNA was not detected by RT-qPCR.