TABLE 1.
Sample | Sample type | Spiked PV viriona |
Spiked PV RNAb (nondilution) |
||||
---|---|---|---|---|---|---|---|
Nondilution |
100-fold dilution |
||||||
GMc (%) | GSDc | GM (%) | GSD | GM (%) | GSD | ||
Blank (Milli-Q) | Raw | 100 | 0.08 | ||||
Filt | 67 | 0.04 | |||||
Acid | 70 | 0.05 | |||||
Conc | 100 | 0.03 | |||||
Wa-HA | Raw | 0.030 | 0.14 | 56 | 0.05 | ||
Filt | 91 | 0.18 | |||||
Acid | 106 | 0.08 | |||||
Conc | 0.10 | 0.39 | 33 | 0.44 | |||
Ald-HA | Raw | <0.0001d | 53 | 0.28 | |||
Filt | 110 | 0.17 | |||||
Acid | 130 | 0.26 | |||||
Conc | 0.00078 | 0.14 | 73 | 0.05 | |||
IH-HA | Raw | 130 | 0.26 | <0.0001 | - | ||
Filt | 150 | 0.19 | 5.2 | 0.22 | |||
Acid | 160 | 0.14 | |||||
Conc | 130 | 0.24 | |||||
R1 | Raw | 89 | |||||
Conc | 9.9 | 62 | |||||
R2 | Raw | 140 | |||||
Conc | <0.0001 | 150 | |||||
R3 | Raw | 110 | |||||
Conc | <0.0001 | 77 |
PV virions were spiked into the samples just before the RNA extraction step.
Extracted PV RNA was spiked into the samples to a final concentration of 4.5 × 104 GC/μl and quantified without an RNA extraction step.
GM and GSD, geometric mean and geometric standard deviation, respectively (n = 3 for blank and humic acid samples; n = 1 for river water samples; GSD for river water samples cannot be shown).
<0.0001% indicates that spiked PV or PV RNA was not detected by RT-qPCR.