Table 1.
List of the 47 miRNAs used for cancer molecular classification
| No | MicroRNA | ANOVA p value |
Gene family |
miRNA cluster | Cytoband | Chromosome coordinates (GRCh37) |
|---|---|---|---|---|---|---|
| 1 | hsa-miR-10a | 8.39E–05 | mir-10 | – | 17q21.33 | 17:46657200–46657309 [−] |
| 2 | hsa-miR-10a* | 4.01E–03 | mir-10 | – | 17q21.33 | 17:46657200–46657309 [−] |
| 3 | hsa-miR-122 | 5.13E–18 | mir-122 | – | 18q21.32 | 18: 56118306–56118390 [+] |
| 4 | hsa-miR-126* | 1.30E–07 | mir-126 | – | 9q34.3 | 9:139565054–139565138 [+] |
| 5 | hsa-miR-135b | 1.86E–05 | mir-135 | – | 1q32.1 | 1:205417430–205417526 [−] |
| 6 | hsa-miR-141 | 4.55E–12 | mir-8 | mir-200c/mir-141 | 12p13.31 | 12:7073260–7073354 [+] |
| 7 | hsa-miR-145 | 5.98E–09 | mir-145 | mir-143/mir-145 | 5q33.1 | 5:148810209–148810296 [+] |
| 8 | hsa-miR-146a | 3.25E–06 | mir-146 | – | 5q33.3 | 5:159912359–159912457 [+] |
| 9 | hsa-miR-149 | 4.82E–07 | mir-149 | – | 2q37.3 | 2: 241395418–241395506 [+] |
| 10 | hsa-miR-181a-2* | 4.26E–07 | mir-181 | mir-181a-2/mir-181b-2 | 9q33.3 | 9:127454721–127454830 [+] |
| 11 | hsa-miR-182 | 1.06E–07 | mir-182 | mir-183/mir-96/mir-182 | 7q32.2 | 7:129410223–129410332 [−] |
| 12 | hsa-miR-183 | 5.89E–07 | mir-183 | mir-183/mir-96/mir-182 | 7q32.2 | 7:129414745–129414854 [−] |
| 13 | hsa-miR-187* | 1.05E–03 | mir-187 | – | 18q12.2 | 18:33484781–33484889 [−] |
| 14 | hsa-miR-192 | 2.18E–13 | mir-192 | mir-194-2/mir-192 | 11q13.1 | 11:64658609–64658718 [−] |
| 15 | hsa-miR-193a-3p | 3.24E–06 | mir-193 | – | 17q12 | 17:29887015–29887102 [+] |
| 16 | hsa-miR-194 | 1.38E–11 | mir-194 | mir-194-1/mir-215 | 1q41 | 1:220291499–220291583 [−] |
| 17 | hsa-miR-194* | 3.71E–12 | mir-194 | mir-194-1/mir-215 | 1q41 | 1:220291499–220291583 [−] |
| 18 | hsa-miR-200a | 5.15E–09 | mir-8 | mir-200b/mir-200a/mir-429 | 1p36.2 | 1:1103243–1103332 [+] |
| 19 | hsa-miR-200a* | 1.80E–06 | mir-8 | mir-200b/mir-200a/mir-429 | 1p36.2 | 1:1103243–1103332 [+] |
| 20 | hsa-miR-200b | 7.07E–11 | mir-8 | mir-200b/mir-200a/mir-429 | 1p36.2 | 1:1102484–1102578 [+] |
| 21 | hsa-miR-200b* | 1.80E–05 | mir-8 | mir-200b/mir-200a/mir-429 | 1p36.2 | 1:1102484–1102578 [+] |
| 22 | hsa-miR-200c | 9.29E–17 | mir-8 | mir-200c/mir-141 | 12p13.31 | 12:7072862–7072929 [+] |
| 23 | hsa-miR-204 | 1.28E–08 | mir-204 | – | 9q21.13 | 9: 73424891–73425000 [−] |
| 24 | hsa-miR-205 | 8.35E–07 | mir-205 | – | 1q32.2 | 1:209605478–209605587 [+] |
| 25 | hsa-miR-210 | 3.09E–04 | mir-210 | – | 11p15.4 | 11:568089–568198[−] |
| 26 | hsa-miR-211 | 9.88E–27 | mir-204 | – | 15q13.3 | 15:31357235–31357344 [−] |
| 27 | hsa-miR-215 | 4.64E–12 | mir-192 | mir-194-1/mir-215 | 1q41 | 1:220291195–220291304 [−] |
| 28 | hsa-miR-30a | 5.82E–05 | mir-30 | – | 6q13 | 6:72113254–72113324 [−] |
| 29 | hsa-miR-30a* | 7.62E–07 | mir-30 | – | 6q13 | 6:72113254–72113324 [−] |
| 30 | hsa-miR-30c | 1.24E–08 | mir-30 | – | 1 p34.2 | 1:41222956–41223044 [+] |
| 31 | hsa-miR-31 | 8.96E–04 | mir-31 | – | 9p21.3 | 9: 21512114–21512184 [−] |
| 32 | hsa-miR-31* | 6.40E–04 | mir-31 | – | 9p21.3 | 9: 21512114–21512184 [−] |
| 33 | hsa-miR-340* | 6.16E–10 | mir-340 | – | 5q35.3 | 5:179442303–179442397 [−] |
| 34 | hsa-miR-342-3p | 2.97E–06 | mir-342 | – | 14q32.3 | 14:100575992–100576090 [+] |
| 35 | hsa-miR-361-5p | 4.51E–06 | mir-361 | – | Xq21.2 | X:85158641–85158712 [−] |
| 36 | hsa-miR-363 | 3.21E–07 | mir-363 | mir-106a/mir-18b/mir-20b/mir-19b-2/ mir-92a-2/mir-363 |
Xq26.2 | X: 133303408–133303482 [−] |
| 37 | hsa-miR-375 | 2.10E–07 | mir-375 | – | 2q35 | 2: 219866367–219866430 [−] |
| 38 | hsa-miR-485-5p | 2.14E–02 | mir-485 | 17 miRNA cluster | 14q32.3 | 14:101521756–101521828 [+] |
| 39 | hsa-miR-506 | 1.72E–19 | mir-506 | mir-508/mir-507/mir-506/mir-513a-2 | Xq27.3 | X:146312238–146312361 [−] |
| 40 | hsa-miR-508-3p | 5.36E–13 | mir-506 | mir-508/mir-507/mir-506/mir-513a-2 | Xq27.3 | X:146318431–146318545 [−] |
| 41 | hsa-miR-509-3p | 5.48E–26 | mir-506 | mir-509-1/mir-509-2/mir-509-3 | Xq27.3 | X:146342050–146342143 [−] |
| 42 | hsa-miR-510 | 5.75E–09 | mir-506 | mir-510/mir-514-1/mir-514-2/mir-514-3 | Xq27.3 | X:146353853–146353926 [−] |
| 43 | hsa-miR-514 | 5.76E–23 | mir-506 | mir-510/mir-514-1/mir-514-2/mir-514-3 | Xq27.3 | X:146360765–146360862 [−] |
| 44 | hsa-miR-552 | 2.20E–10 | mir-552 | – | 1 p34.3 | 1:35135200–35135295 [−] |
| 45 | hsa-miR-650 | 1.03E–06 | mir-650 | – | 22q11.23 | 22:23165270–23165365 [+] |
| 46 | hsa-miR-873 | 1.02E–04 | mir-873 | – | 9p21.1 | 9:28888877–28888953 [−] |
| 47 | hsa-miR-96 | 4.87E–10 | mir-96 | mir-183/mir-96/mir-182 | 7q32.2 | 7:129414532–129414609 [−] |