. 2014 Dec 24;89(5):2750–2763. doi: 10.1128/JVI.02620-14

TABLE 1.

Sequence alignment for Rpn11 using CLUSTAL 2.1

Protein	Sequence^a
AtRPN11	`MERLQRIFGAGGGLGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 60`
ScRPN11	`------MMNSKVGSADTGRD----DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEF 50`
	`::.: * ..:. * *. ***:***********************`
AtRPN11	`VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCW 120`
ScRPN11	`VDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCW 110`
	`:.*****************.:::*************************`
AtRPN11	`LSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNL 180`
ScRPN11	`LSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNT 170`
	`.:*:* .********************* :.::: . *******`
AtRPN11	`GHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTN 240`
ScRPN11	`GLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESN 230`
	`* *..***********: ::. * *:*:: .*.::::.::`
AtRPN11	`EQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLG 300`
ScRPN11	`LAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLT 290`
	`:.:.:.::.::.: : ***.*. ..::..**..`
AtRPN11	`TMLDTVVF- 308`
ScRPN11	`AGVNSVAIK 299`
	`::::*.:`

Asterisk (*), conserved amino acid; colon (:), conservative amino acid; period (.), semiconservative amino acid.