Table 6.
Summary of the Assembly Statistics of the Real Datasets
| Tilapia1 | ||||
|---|---|---|---|---|
| Assembler | TL (kb)1 | Num2 | LLC (bp)3 | N50 (bp)4 |
| DIME-cap3 | 48.7 | 51 | 1,896 | 1,017 |
| DIME-genovo | 53.6 | 59 | 3,767 | 939 |
| Cap3 | 51.7 | 56 | 2,856 | 1,032 |
| Genovo | 56.3 | 49 | 6,510 | 1,062 |
| MetaVelvet | 1.0 | 2 | 541 | 541 |
| SOAPdenovo | 1.5 | 2 | 941 | 941 |
| SPAdes | 50.0 | 32 | 6,455 | 2,168 |
| NTS | ||||
|---|---|---|---|---|
| DIME-cap3 | 25,054.6 | 32,032 | 4,284 | 773 |
| DIME-genovo | 70,998.3 | 108,765 | 9,617 | 558 |
| Cap3 | 12,250.7 | 16,859 | 2,399 | 731 |
| Genovo | NA | NA | NA | NA |
| MetaVelvet | 4,809.8 | 7,542 | 1,560 | 627 |
| SOAPdenovo | 801.2 | 1,438 | 1,014 | 553 |
| SPAdes | 31,973.0 | 1,070 | 11,531 | 2,929 |
| SRR072232 | ||||
|---|---|---|---|---|
| DIME-cap3 | 59,664.2 | 60,399 | 10,142 | 1,012 |
| DIME-genovo | 63,752.6 | 57,122 | 45,359 | 1,155 |
| Cap3 | 34,434.7 | 31,726 | 8,293 | 1,112 |
| Genovo | NA | NA | NA | NA |
| MetaVelvet | 8,357.7 | 13,369 | 2,573 | 603 |
| SOAPdenovo | 36,167.5 | 53,190 | 3,024 | 648 |
| SPAdes | 18,252.6 | 5,883 | 210,238 | 7,700 |
TL, total length of contigs; Num, number of contigs. LLC, longest length of contigs. N50, the N50 value x is the size of the smallest contig such that 50% of the genome is covered by contigs of length ≥ x.