Table 1.
COG annotations of the shared genes among the chromosomal core and extended core sets
| COG ID | Functional annotation | Chromosome number | Plasmid number |
|---|---|---|---|
| 32477 | Predicted membrane protein [Function unknown] | 20 | 7 |
| 131886 | Stage V sporulation protein AE | 20 | 6 |
| 131885 | Stage V sporulation protein AC | 20 | 6 |
| 183504 | Stage V sporulation protein AD | 20 | 6 |
| 178955 | ATP-dependent Clp protease proteolytic subunit | 20 | 5 |
| 105987 | Hypothetical protein | 20 | 5 |
| 193180 | MacB-like periplasmic core domain. | 20 | 4 |
| 73014 | This family is composed of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE) and release of lipoproteins from the cytoplasmic membrane (LolCDE) | 20 | 4 |
| 162057 | Arsenic-resistance protein | 20 | 4 |
| 31088 | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 20 | 4 |
| 162505 | RND family efflux transporter, MFP subunit | 20 | 4 |
| 115457 | Sugar transport protein | 20 | 4 |
| 184117 | Arsenate reductase | 20 | 4 |
| 181585 | Glucose-1-dehydrogenase | 20 | 4 |
| 32652 | Zn-ribbon-containing protein involved in phosphonate metabolism | 20 | 3 |
| 163006 | Polysaccharide deacetylase family sporulation protein PdaB | 20 | 3 |
| 31331 | ABC-type antimicrobial peptide transport system, ATPase component | 20 | 3 |
| 31475 | Uncharacterized conserved protein | 20 | 3 |
| 197627 | Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer) | 20 | 3 |
| 190390 | FtsX-like permease family | 20 | 3 |
| 179411 | Adenine phosphoribosyltransferase | 20 | 2 |
| 31326 | ABC-type multidrug transport system, ATPase component | 20 | 2 |
| 32452 | Sugar phosphate permease | 20 | 1 |
| 151609 | Protein of unknown function | 20 | 1 |
| 188197 | Penicillin-binding protein, 1A family | 20 | 1 |
| 34374 | Predicted membrane protein | 20 | 1 |
| 31911 | Predicted transcriptional regulators | 20 | 1 |
| 189896 | Formate/nitrite transporter | 20 | 1 |
| 34876 | Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain | 20 | 1 |
| 30931 | Uncharacterized membrane-associated protein | 20 | 1 |
| 191813 | Major facilitator superfamily | 20 | 1 |
| 162221 | Cysteine synthase A | 20 | 1 |
| 181811 | Membrane-bound transcriptional regulator LytR | 20 | 1 |
| 31361 | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | 20 | 1 |
| 179521 | D-serine dehydratase | 20 | 1 |
| 188607 | D-alanyl-lipoteichoic acid biosynthesis protein DltD | 20 | 1 |
| 162128 | Carboxylate/amino acid/amine transporter | 20 | 1 |
| 110729 | Collagenase | 20 | 1 |
| 129987 | Amino acid transporter | 20 | 1 |
| 173869 | The substrate-binding component of an ABC-type oligopeptide import system containing the type 2 periplasmic binding fold | 19 | 13 |
| 163059 | Germination protein, Ger(x)C family | 19 | 7 |
| 183898 | N-acetylglucosamine-binding protein A | 19 | 6 |
| 189798 | Sodium/hydrogen exchanger family | 19 | 6 |
| 30836 | Putative regulatory ligand-binding protein related to C-terminal domains of K channels | 19 | 4 |
| 178836 | L-lactate dehydrogenase | 19 | 1 |
| 31520 | Transcriptional regulators, similar to M | 19 | 1 |
| 31856 | Acetyltransferases, including N-acetylases of ribosomal proteins | 19 | 1 |
| 48387 | Nitroreductase-like family 4 | 19 | 1 |
| 176695 | C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA) and similar proteins | 19 | 1 |
| 145290 | BCCT family transporter | 19 | 1 |
| 110729 | Collagenase | 19 | 1 |
| 30749 | Predicted esterase | 19 | 1 |
| 31331 | ABC-type antimicrobial peptide transport system, ATPase component | 19 | 1 |
| 147640 | NosL. NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster | 19 | 1 |
| 162053 | Serine transporter | 19 | 1 |