Table 1.
Chr | Strand | miRNA | U118 | ADAR2 | ADAR2 E/A | siADAR2 | P -value | Pooled human brain | Human frontal lobe | Glioblastoma | Location in pre-miR | Location in mature miR |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Chr9 | + | hsa-let-7d* | 0.3 | 2.0 | 0 | 0.5 | 1.61E-10 | 1.2 | 0.7 | 0 | 66 | 5 |
Chr17 | - | hsa-mir-22 | 0 | 0.1 | 0 | 0.1 | 5.50E-34 | 0 | 0 | 0 | 67 | 15 |
Chr19 | - | hsa-mir-24–2* | 0.1 | 16.4 | 0 | 7.1 | <1E-155 | 0.8 | 2.3 | ND | 18 | 6 |
Chr19 | - | hsa-mir-27a* | 0.1 | 22.5 | 0.1 | 9.8 | <1E-155 | ND | 0 | 2.6 | 10 | 1 |
Chr21 | + | hsa-mir-99a | 0.1 | 13.8 | 0 | 6.9 | <1E-155 | 5.0 | 1.2 | 0 | 13 | 1 |
Chr11 | - | hsa-mir-100 | 0 | 0.2 | 0 | 0.1 | 1.22E-145 | 0 | 0 | 0 | 13 | 1 |
Chr3 | + | hsa-mir-138–1* | 0 | 0.8 | 0 | 0.5 | 2.57E-35 | 2.1 | 0.2 | ND | 74 | 12 |
Chr8 | - | hsa-mir-151 | 0.1 | 0.3 | 0 | 0.2 | 5.70E-13 | 0.9 | 0.6 | ND | 49 | 3 |
Chr11 | - | hsa-mir-210 | 0 | 0.5 | 0 | 0.5 | 2.31E-11 | ND | ND | 0 | 77 | 12 |
Chr14 | + | hsa-mir-411 | 0 | 12.6 | 0 | 5.6 | 4.31E-39 | 15.3 | 13.9 | 3.2 | 20 | 5 |
Chrx | - | hsa-mir-421 | 0.2 | 13.8 | 0.5 | 9.6 | <1E-155 | 1.8 | 1.0 | 0 | 61 | 14 |
Chr9 | + | hsa-mir-455 | 0 | 14.2 | 0 | 5.7 | <1E-155 | 1.2 | 0.9 | 0 | 32 | 17 |
Chr17 | - | hsa-mir-497 | 0 | 26.1 | 0 | 16.7 | 1.73E-155 | 6.2 | 0.6 | 0 | 25 | 2 |
Chrx | - | hsa-mir-503 | 0 | 5.9 | 0 | 1.7 | 8.75E-14 | ND | ND | 0 | 7 | 2 |
Chr7 | - | hsa-mir-589* | 2.3 | 9.5 | 2.2 | 2.9 | 1.36E-31 | 70.0 | 74.1 | 0 | 66 | 6 |
Chr19 | - | hsa-mir-641 | 0 | 17.0 | 0 | 8.8 | 5.83E-116 | 0 | 0 | 0 | 17 | 2 |
Chr19 | - | hsa-mir-641 | 0 | 3.0 | 0 | 0.9 | 2.45E-14 | 0 | 3.6 | 0 | 18 | 3 |
Chr10 | - | hsa-mir-3157* | 0 | 69.4 | 0 | 54.5 | 1.55E-90 | ND | ND | 0 | 70 | 13 |
Chr16 | + | hsa-mir-3176 | 0 | 10.9 | 0 | 8.2 | 6.73E-41 | ND | ND | 0 | 74 | 15 |
A-to-G changes in mature miRNAs isolated from U118 cell lines (untreated, ADAR2, ADAR2 E/A, siADAR2), human brains (pooled and frontal lobe) and glioblastoma. The statistically significant modifications are marked in bold; the edited miRNAs that were not identified in our previous analysis are indicated in italics [23]; miRNAs that are both edited and modulated by ADAR2 are indicated in bold (Additional files 2 and 3).
Editing levels are represented as percentages. ND, not determined (with <10 reads).