Table 2.

Summary of the sequencing reads alignment to the reference genome

Statistics term	IM	CM	CMT
All reads	40578646	45391430	32329976
Unmapped reads	4949040	5702066	4154466
Mapped reads	35629606	39689364	28175510
Mapping rate	0.878	0.874	0.871
Unique mapping	32288705	36243263	25183689
Unique mapping rate	0.796	0.798	0.779
Repeat mapping	3340701	3445877	2991640