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. 2015 Feb 3;15:29. doi: 10.1186/s12870-015-0420-x

Table 3.

Chromosomic locations and confidence intervals (CI) of QTL with their flanking markers and number of genes within the CI from the connected analysis for the traits red edges (RE), virus extinction (EX), infection rate (IR) from the adjusted means of the field experiment, and for the traits EX and IR from the adjusted means of the greenhouse experiment

Trait Chr Pos [cM] LOD R 2 CI [cM] Flanking Physical Number
markers interval [bp] of genes
Field
EX 10 46.9 76.88 45 45-49 PUT-163a-60352819-2700 SYN15407 127005619 134855671 224
IR 10 46.9 80.26 46 45-51 PUT-163a-60352819-2700 SYN15407 127005619 134855671 224
RE 2 55.1 11.23 11 33-59 SYN29639 PZE-102117636 49294378 158105037 1173
10 52.1 39.76 30 44-52 PUT-163a-60352819-2700 SYN15407 127005619 134855671 224
Simultaneous fit 36
Greenhouse
EX 10 46.9 37.15 29 44-52 PUT-163a-60352819-2700 SYN15407 127005619 134855671 224
IR 9 24.2 9.72 10 17-37 PZA03759.2 PZE-109068137 84335878 112017256 433
10 46.9 38.51 30 44-52 PUT-163a-60352819-2700 SYN15407 127005619 134855671 224
Simultaneous fit 36