Table 3.
Chromosomic locations and confidence intervals (CI) of QTL with their flanking markers and number of genes within the CI from the connected analysis for the traits red edges (RE), virus extinction (EX), infection rate (IR) from the adjusted means of the field experiment, and for the traits EX and IR from the adjusted means of the greenhouse experiment
| Trait | Chr | Pos [cM] | LOD | R 2 | CI [cM] | Flanking | Physical | Number | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| markers | interval [bp] | of genes | |||||||||||
| Field | |||||||||||||
| EX | 10 | 46.9 | 76.88 | 45 | 45-49 | PUT-163a-60352819-2700 | SYN15407 | 127005619 | 134855671 | 224 | |||
| IR | 10 | 46.9 | 80.26 | 46 | 45-51 | PUT-163a-60352819-2700 | SYN15407 | 127005619 | 134855671 | 224 | |||
| RE | 2 | 55.1 | 11.23 | 11 | 33-59 | SYN29639 | PZE-102117636 | 49294378 | 158105037 | 1173 | |||
| 10 | 52.1 | 39.76 | 30 | 44-52 | PUT-163a-60352819-2700 | SYN15407 | 127005619 | 134855671 | 224 | ||||
| Simultaneous fit | 36 | ||||||||||||
| Greenhouse | |||||||||||||
| EX | 10 | 46.9 | 37.15 | 29 | 44-52 | PUT-163a-60352819-2700 | SYN15407 | 127005619 | 134855671 | 224 | |||
| IR | 9 | 24.2 | 9.72 | 10 | 17-37 | PZA03759.2 | PZE-109068137 | 84335878 | 112017256 | 433 | |||
| 10 | 46.9 | 38.51 | 30 | 44-52 | PUT-163a-60352819-2700 | SYN15407 | 127005619 | 134855671 | 224 | ||||
| Simultaneous fit | 36 | ||||||||||||