Table 1.

Summary of whole genome DNA sequence assemblies generated in the current study, Rutstroemia sydowiana CBS 115975 and Sclerotinia echinophila CBS 11548, and previously published genome sequences from the family Sclerotineaceae. The genomes of R. sydowiana CBS 115975, S. echinophila CBS 11548, and S. borealis F-4157 were generated using next generation sequencing technology; S. sclerotiorum 1980 and B. cinerea T4 genomes were produced from a Sanger sequencing approach. Not all summary data were available for S. borealis F-4157.

	Rutstroemia sydowiana	Sclerotinia echinophila	Sclerotinia borealis	Sclerotinia sclerotiorum	Botytris cinerea
	CBS 115975	CBS 11548	F-4157	1980	T4
Summary data
Coverage	121	101	23	9.1	10
CEGMA	97.20%	93.60%	99.20%	100.00%	98.40%
Total sequence length (Mb)	51.9	40.3	39.5	38.3	39.5
Number of scaffolds	11591	7348	1241	36	118
Scaffold N50	14947	9536	130819	1630000	562000
Number of contigs	14655	12842	1741	679	2281
Contig N50	8570	4918	79787	122550	35000
GC (%)	43.1	43.1	42	41.8	42.4
Predicted gene models	17350	12555	10171	14503	10391
Predicted secreted proteins	1120	880	-	879	630
Predicted CAZYmes
Total CAZYmes	789	641	-	578	657
Pectate lyases	10	4	-	6	11
Glycosyltransferases	122	100	-	92	105
Glycoside hydrolases	316	248	-	227	245
Carbohydrate esterases	133	120	-	99	130
Carbohydrate binding motifs	66	64	-	62	71
Predicted Secondary Metabolite (SM) Clusters
Total SM clusters	74	58	-	35	50
Type I polyketide synthetases (PKSs)	27	20	-	15	14
Type III PKSs	2	2	-	1	1
Nonribosomal peptide synthetases (NRPSs)	10	7	-	7	12
Terpene clusters	14	6	-	4	8
Hglks	2	4	-	0	0