. 2015 Jan 6;81(3):519–528. doi: 10.1111/tpj.12734

Table 2.

Gene catalog optimization. Results of the gene catalog optimization procedure in comparison with Thalassiosira pseudonana (Thaps) and Phaeodactylum tricornutum (Phatr) genome assemblies

	Gene models total	Gene models beginning with ‘ATG’ (%)	Gene models with signal peptides (%)
Thaps v3.0 initial release^a	11 776	–	1384 (12)
Thaps v3.0 filtered models^b	11 390	9477 (83.2)	2077 (18.24)
Thaps optimized catalog^c	13 344^d	12 756 (95.59)	2915^e (21.85)
Phatr v2.0 initial release^a	10 402	–	1479 (14)
Phatr v2.0 filtered models^b	10 025	8917 (88.94)	2070 (20.65)
Phatr optimized catalog^c	10 814^f	10 611 (98.12)	2648^g (24.49)

See Bowler et al. (2008).

Downloaded via the JGI genome portals on 8 August 2011.

See Figure5 and text for details.

All sequences in Dataset S1.

SignalP positive sequences in Table S7.

All sequences in Dataset S2.

SignalP positive sequences in Table S8.