Table 1. Comparison gene structures in old and new annotation.
Feature | Old | New | Add | Rem | Merg | Split | Ext | Short |
---|---|---|---|---|---|---|---|---|
Introns | 137 | 175 | 38 | 0 | 0 | 0 | 2 | 1 |
5′UTR | 0 | 4906 | 4906 | 0 | 0 | 0 | 0 | 0 |
3′UTR | 0 | 4923 | 4923 | 0 | 0 | 0 | 0 | 0 |
Proteincoding Genes | 5213 | 5288 | 49 | 7 | 2 | 1 | 123 | 6 |
Pseudogenes | 22 | 42 | 0 | 0 | 0 | 14 | 0 | 0 |
tRNAs | 230 | 230 | 0 | 0 | 0 | 0 | 0 | 0 |
ncRNAs | 10 | 68 | 58 | 0 | 0 | 0 | 6 | 1 |
rRNAs | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 |
This table compares the old and new annotation for different genomic features. As main results, we identified 49 novel protein-coding genes and 58 novel non-protein-coding genes, as well as added UTR annotation to the majority of gene. In this study, we split 14 previously annotated pseudogenes into 32 genes whose translated sequences do not contain a stop codon. Most probably these are not pseudogenes. Add = added, Rem = removed, Merg = merged, Split = splitted, Ext = extended, Short = shortened.