Figure 3.

Isoform-Level Transcriptome Maps of Healthy and Virus-Infected B. distachyon.

(A) and (B) Venn diagrams of expressed genes (A) and their corresponding transcripts (B) with FPKM ≥ 2 among mock, PMV-, and PMV+SPMV-infected plants.

(C) to (G) Read densities mapped along the five B. distachyon chromosomes in mock (M), PMV- (P), and PMV+SPMV-infected (PS) plants show extensive transcriptional activity throughout the genome. The arrowheads indicate centromeric regions. Read densities (log₂ RPM) were quantitated and plotted against reference chromosome models (Bd21v1.2) using Seqmonk tools.