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. Author manuscript; available in PMC: 2016 Mar 1.
Published in final edited form as: Comput Biol Med. 2014 Dec 24;0:1–13. doi: 10.1016/j.compbiomed.2014.12.013

Table 3.

Number of simulated character pairs used, binned by differences in entropy.

SY–SX Balanced Tree (Figs. 1C, 2A and C, 4A and C, 6A and C) Unbalanced tree (Figs. 1E, 2B and D, 4B and D) GP120 tree (Figs. 1A, 3A and C, 5A and C) Promoter tree (Figs. 1B, 3B and D, 5B and D, 6B)
TP TN TP TN TP TN TP TN
−0.06 to −0.04 0 0 1 849 3 1,627
−0.04 to −0.02 10 3644 37 9,695 94 2,596 112 4,049
−0.02 to 0 513 5138 1368 30,288 1351 7,301 1476 12,005
exactly 0 175 709 434 3,031 263 452 248 595
0 to 0.02 340 4497 1278 37,630 1255 12,723 1236 14,421
0.02 to 0.04 5 4740 41 21,368 125 16,645 77 14,883
0.04 to 0.06 0 2 14,959 5 20,978 3 18,633

Each column gives a tree used for simulations, as well as the figure panels where those simulations are described. Each cell gives the number of pairs of characters used in simulations for the corresponding entropy bin; TP (true positive) columns are pairs of coupled position pairs X,Y′, while TN (true negative) columns are uncoupled position pairs X,Y.