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. Author manuscript; available in PMC: 2016 Mar 1.
Published in final edited form as: J Shoulder Elbow Surg. 2015 Jan 13;24(3):382–390. doi: 10.1016/j.jse.2014.11.039

Table I.

Nineteen genes evaluated

Gene Tested Gene Name Primer 1 Primer 2
Collagen type I COL1A1 5′-CCT GCG TGT ACC CCA CTC A-3′ 5′-ACC AGA CAT GCC TCT TGT CCT T-3′
Collagen type II COL2A1 5′-TTG CCT ATC TGG ACG AAG CA-3′ 5′-TCA TTG GAG CCC TGG ATG A-3′
Collagen type X COLlOAl 5′-CCA AAG CTT ACC CAG CAA TAG G-3′ 5′-TGC TGT TGC CTG TTA TAC AAA ATT T-3′
Metalloproteinase 1 MMP1 5′-TTT GAT GGA CCT GGA GGA AAT C-3′ 5′-TGA GCA TCC CCT CCA ATA CC-3′
Metalloproteinase 3 MMP3 5′-CCT GGT ACC CAC GGA ACC T-3′ 5′-GGA CAA AGC AGG ATC ACA GTT G-3′
Metalloproteinase 9 MMP9 5′-GAT CCA AAA CTA CTC GGA AGA CTT G-3′ 5′-GAA GGC GCG GGC AAA-3′
Metalloproteinase 13 MMP13 5′-ATT AAG GAG CAT GGC GAC TTC T-3′ 5′-CCC AGG AGG AAA AGC ATG AG-3′
TIMP1 TIMP1 5′-CAC CCA CAG ACG GCC TTC T-3′ 5′-TGG TGT CCC CAC GAA CTT G-3′
TIMP2 TIMP2 5′-CAC CCA GAA GAA GAG CCT GAA-3′ 5′-GGC AGC GCG TGA TCT TG-3′
TIMP3 TIMP3 5′-CCA GGA CGC CTT CTG CAA-3′ 5′-AGC TTC TTC CCC ACC ACC TT-3′
Interleukin 1β IL1B 5′-CGA ATC TCC GAC CAC CAC TAC-3′ 5′-TCC ATG GCC ACA ACA ACT GA-3′
Interleukin 6 IL6 5′-TGT AGC CGC CCC ACA CA-3′ 5′-GGA TGT ACC GAA TTT GTT TGT CAA-3′
Interleukin 17 IL17 5′-TGA TGG GAA CGT GGA CTA CCA-3′ 5′-TGC GCA GGA CCA GGA TCT-3′
Versican VCAN 5′-GCC TAC TTT GCC ACC CAG TTA C-3′ 5′-TTT TGT CCA CTT CAA TCT TAG ACC AT-3′
Cyclooxygenase-2 PTGS2 5′-CAG CAC TTC ACG CAT CAG TTT T-3′ 5′-CCA GCC CGT TGG TGA AAG-3′
iNOS NOS2 5′-TGG ATG CAA CCC CAT TGT C-3′ 5′-CGC TGC CCC AGT TTT TGA T-3′
TNFα TNF 5′-CTC GAA CCC CGA GTG ACA A-3′ 5′-AGC TGC CCC TCA GCT TGA-3′
ADAMTS5 ADAMTS5 5′-AAT AAC CCT GCT CCC AGA AAC A-3′ 5′-GCG GTA GAT GGC CCT CTT C-3′
Connexin 43 GJA1 5′-AAC AAT TCT TCT TGC CGC AAT TAC-3′ 5′-CAT TCG ATT TTG TTC TGC ACT GTA-3′

iNOS, inducible nitric oxide synthase; TIMP, tissue inhibitors of metalloproteinase; ADAMTS5, aggrecanase-2; TNFα, tumor necrosis factor alpha.