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The correlation to microarray fold change calculations, and the numbers of differentially expressed isoforms confirmed by microarray measurements among the top ranked isoforms.
| Top isoforms | 10 | 50 | 100 | 200 | |
|---|---|---|---|---|---|
| PCC | ISP | 0.95 | 0.86 | 0.87 | 0.86 |
| Cuffmerge | 0.89 | 0.82 | 0.82 | 0.81 | |
| confirmed (p < 0.05) | ISP | 9 | 45 | 94 | 170 |
| Cuffmerge | 8 | 43 | 82 | 148 | |
| confirmed (p < 0.001) | ISP | 8 | 35 | 77 | 135 |
| Cuffmerge | 7 | 32 | 64 | 108 | |
