Table 5.
Top 25 SNPs identified by ts-RF in Parkinson case-control data set.
| Rank | SNP | Gene ID | Gene Symbol | p-value |
|---|---|---|---|---|
| 1 | rs7170952 | 64927 | TTC23 | 2.1E-44 |
| 2 | rs850084 | 101928208 | LOC | 3.6E-13 |
| 3 | rs832241 | 5789 | PTPRD | 6.8E-28 |
| 4 | rs1469593 | 647946 | LINC00669 | 1.0E-34 |
| 5 | rs9383311 | 9972 | NUP153 | 1.5E-28 |
| 6 | rs17023875 | 55591 | VEZT | 1.4E-32 |
| 7 | rs9952724 | 9811 | CTIF | 3.7E-11 |
| 8 | rs3087584 | 2043 | EPHA4 | 1.6E-04 |
| 9 | rs10053056 | 831 | CAST | 6.4E-05 |
| 10 | rs6900852 | 135112 | NCOA7 | 2.0E-08 |
| 11 | rs3790577 | 10207 | INADL | 2.4E-25 |
| 12 | rs722571 | 30000 | TNPO2 | 1.6E-09 |
| 13 | rs7924316 | 723961 | INS-IGF2 | 1.1E-06 |
| 14 | rs4956263 | 9811 | CTIF | 2.8E-06 |
| 15 | rs12680546 | 165829 | GPR156 | 1.3E-04 |
| 16 | rs10518765 | 440279 | UNC13C | 1.5E-05 |
| 17 | rs12185438 | 8715 | NOL4 | 7.3E-05 |
| 18 | rs12364577 | 440040 | LOC440040 | 4.4E-10 |
| 19 | rs2157787 | 463 | ZFHX3 | 3.2E-03 |
| 20 | rs17649 | 6692 | SPINT1 | 1.0E-04 |
| 21 | rs6429429 | 10000 | AKT3 | 1.3E-03 |
| 22 | rs2346771 | 3084 | NRG1 | 1.0E-02 |
| 23 | rs2666781 | 64215 | DNAJC1 | 4.2E-04 |
| 24 | rs2867301 | 55204 | GOLPH3L | 3.9E-03 |
| 25 | rs11819434 | 282973 | JAKMIP3 | 3.8E-02 |
Rows in bold indicate useful genes associated with neurological disorders.