Table 1.

Summary of step-by-step proteomics data analysis.

	Total	TFs	Chromatin	Soluble	Controls
Experiments	190	120	60	60	70
Peptides	185,394	113,654	48,077	65,577	71,740
Proteins	29,919	19,698	9,380	10,318	10,221
Passed SAINT	8,500	8,500	3,927	4,573
HCIP	2,156	2,156	1,423	733

The identified proteins and peptide numbers of each group and step were presented.