Table 3.
List of some up-regulated genes involved in major processes associated with fruit ripening according to RNA-seq data (FDR ≤ 0.05).
| Gene identifier | Function | Gene description | Fold-change (Log2) | FDR |
|---|---|---|---|---|
| comp59876 | Ethylene biosynthesis and signaling | 1-aminocyclopropane-1-carboxylate oxidase (ACO) | 7 | 6.72E-09 |
| comp35681 | Ethylene biosynthesis and signaling | 1-aminocyclopropane-1-carboxylate oxidase (ACO) | 2 | 0.0032 |
| comp36021 | Ethylene biosynthesis and signaling | 1-aminocyclopropane-1-carboxylate oxidase (ACO) | 4 | 1.30E-11 |
| comp27110 | Ethylene biosynthesis and signaling | Ethylene-responsive transcription factor (ERF) | 7 | 1.45E-11 |
| comp45079 | Cell wall metabolism | Pectin methyl esterase (PME) | 8 | 1.75E-12 |
| comp28658 | Cell wall metabolism | Polygalacturonase (PG) | 12 | 3.00E-06 |
| comp39571 | Cell wall metabolism | Polygalacturonase (PG) | 9 | 1.02E-06 |
| comp35446 | Cell wall metabolism | Polygalacturonase (PG) | 10 | 5.09E-08 |
| comp34301 | Cell wall metabolism | Polygalacturonase (PG) | 10 | 1.93E-06 |
| comp28658 | Cell wall metabolism | Polygalacturonase (PG) | 12 | 3.00E-06 |
| comp63384 | Cell wall metabolism | Pectate lyase (PL) | 11 | 4.42E-13 |
| comp28245 | Cell wall metabolism | Pectate lyase (PL) | 6 | 8.37E-07 |
| comp49359 | Cell wall metabolism | Pectate lyase (PL) | 5 | 7.62E-12 |
| comp21883 | Cell wall metabolism | Pectate lyase (PL) | 2 | 4.42E-13 |
| comp41701 | Cell wall metabolism | Beta-galactosidase (β-GAL) | 12 | 0.0002 |
| comp41168 | Cell wall metabolism | Beta-galactosidase (β-GAL) | 10 | 0.0001 |
| comp35981 | Cell wall metabolism | Beta-galactosidase (β-GAL) | 9 | 0.0001 |
| comp33387 | Cell wall metabolism | Endoglucanase (GUN) | 9 | 0.0001 |
| comp17443 | Cell wall metabolism | Endoglucanase (GUN) | 10 | 0.0002 |
| comp46653 | Cell wall metabolism | Alpha-galactosidase (α -GAL) | 2 | 0.0165 |
| comp51667 | Cell wall metabolism | Expansin (EXP) | 5 | 9.90E-09 |
| comp32472 | Cell wall metabolism | Expansin (EXP) | 17 | 8.22E-20 |
| comp35294 | Cell wall metabolism | Expansin (EXP) | 6 | 5.08E-08 |
| comp25112 | Cell wall metabolism | Rhamnogalacturonate lyase (RGL) | 5 | 2.82E-13 |
| comp44364 | Isoprenoid biosynthetic process | Isopentenyl-diphosphate delta-isomerase (IDI) | 2 | 0.0084 |
| comp48152 | Isoprenoid biosynthetic process | Farnesyl pyrophosphate synthase (FPPS) | 2 | 0.0001 |
| comp48107 | Isoprenoid biosynthetic process | Geranylgeranyl pyrophosphate synthase (GGPS) | 8 | 2.59E-16 |
| comp45134 | Sucrose metabolic process | Sucrose synthase 7 (SuSy) | 7 | 1.72E-16 |
| comp42184 | Carotenoid metabolic process | Lycopene isomerase (CRTISO) | 4 | 0.0014 |
| comp45152 | Carotenoid metabolic process | Beta-carotene 3-hydroxylase (CHYB) | 4 | 0.0061 |
| comp44532 | Polysaccharide catabolic process | Beta-amylase (BAM) | 3 | 1.02E-06 |
| comp39992 | Polysaccharide catabolic process | Beta-amylase (BAM) | 2 | 0.0001 |