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. 2015 Feb;1854(2):110–117. doi: 10.1016/j.bbapap.2014.10.002

Table 1.

Secondary structure analysis. Residues are assigned to the main secondary structure elements of the different NS conformers based on analysis of the crystallographic coordinates, MD simulations and CD data.

α-Helix β-Sheet Other
Native 111 ± 3 108 ± 6 188 ± 7 in vitro1
107 ± 7 115 ± 7 185 ± 14 in silico2
100 118 189 in crystal3
116 119 172 in crystal4
Cleaved 087 ± 2 139 ± 3 181 ± 4 in vitro1
106 ± 7 135 ± 7 166 ± 14 in silico2
108 145 154 in crystal5
Latent 081 ± 2 138 ± 4 188 ± 5 in vitro1
102 ± 6 125 ± 6 180 ± 12 in silico2
Polymer 094 ± 2 118 ± 4 195 ± 6 in vitro1

Including not resolved residues.

1

Calculated by CDPro from CD spectra.

2

Calculated by STRIDE from MD simulation.

3

Calculated by STRIDE from PDB ID: 3F5N[15].

4

Calculated by STRIDE from PDB ID: 3FGQ[27].

5

Calculated by STRIDE from PDB ID: 3F02[15].