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. 2015 Feb 13;10(2):e0116826. doi: 10.1371/journal.pone.0116826

Table 2. Component of ra-siRNAs of G. barbadense.

Type Cotton Sub-genome
A2 D5 Both A2 and D5 Total
Transposon 31,102 49,934 14,973 66,063
DNA/MuDR 21,050 30,748 9,794 42,004
DNA/En-Spm 6,144 12,550 3,305 15,389
DNA 2,636 4,830 1,304 6,162
DNA/hAT 1,150 1,549 486 2,213
DNA/Harbinger 42 152 32 162
DNA/TcMar 80 96 52 124
DNA/Mite 0 6 0 6
RC/Helitron 0 3 0 3
Retrotransposon 2,091,427 2,213,611 857,458 3,447,580
LTR 796,849 922,373 343,074 1,376,148
LTR/Gypsy 737,565 536,980 282,674 991,871
LTR/Copia 216,186 227,997 89,959 354,224
Non LTR 37,724 56,264 18,520 75,468
Retroelement 301,759 467,958 122,859 646,858
LINE 1,344 2,037 372 3,009
SINE 0 2 0 2
rRNA 25,763 22,994 20,772 27,985
Simple repeat 15,852 7,133 5,641 17,344
Others 14 148 8 154
Total 2,164,158 2,293,820 898,852 3,559,126