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. 2014 Dec 29;43(2):817–835. doi: 10.1093/nar/gku1361

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — Novel AluYa5-derived transcription units associated to snaR clusters. (A) Genome browser visualization of RNA-seq stranded expression profiles of three AluYa5-derived transcription units (Ya5-lm, indicated by red arrows) within the snaR A/C/D cluster on chromosome 19 (41). (B) Transcription unit architecture and sequence of a Ya5-lm repeat (coordinates in parentheses). (C) Sequence alignment of Ya5-lm with Repbase reference sequences for AluYa5 and AluYb8. (D) Genome browser visualizations of RNA-seq stranded expression profiles around the Ya5-lm element represented in panel B, in the cell lines indicated on the left. The dark red bars identify regions associated to Pol III (Rpc155 subunit) in either K562 or HeLa cells as derived from ENCODE ChIP-seq data.