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. 2015 Jan 6;43(2):1283–1296. doi: 10.1093/nar/gku1374

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 9. — Sequence conservation in NagR transcription factor-binding sites in Bacillales. The nucleotide preference was calculated from the binding site sequences listed in Supplementary Table S2 and was generated with WebLogo 3.3 (34). GC bases are colored in gray, AT bases in blue. Nucleotides anticipated to participate in sequence-specific transcription factor binding are marked in red. Gly69 (wing motif), Arg38 (α_D2) and Arg48 (α_D3) are the NagR residues involved in base-specific DNA binding. These residues bind either to the listed segment or to the complementary strand.