TABLE 1.
B. pseudomallei isolate and assembly characteristics
Strain name | Isolation sourcea | GenBank accession no. | Sequence data type(s)b |
---|---|---|---|
MSHR44 | Clinical, Australia | JQIM00000000 | I, R, P |
MSHR62 | Clinical, Australia | CP009235, CP009234 | I, R, P |
MSHR303 | Clinical, Australia | JQDD00000000 | I, R, P |
MSHR332 | Clinical, Australia | JQFM00000000 | I, R |
MSHR435 | Clinical, Australia | JRFP00000000 | I, R, P |
MSHR449 | Clinical, Australia | JQFO00000000 | I, R |
MSHR456 | Clinical, Australia | JQFN00000000 | I, R, P |
MSHR465J | Clinical, Australia | JPZW00000000 | I, R, P |
MSHR543 | Clinical, Australia | JPZX00000000 | I, R, P |
MSHR640 | Clinical, Australia | JQFP00000000 | I, R, P |
MSHR684 | Clinical, Australia | JQDC00000000 | I, R, P |
MSHR733 | Clinical, Australia | JQEE00000000 | I, R, P |
MSHR983 | Clinical, Australia | JQDI00000000 | I, R |
MSHR1000 | Clinical, Australia | JQEF00000000 | I, R, P |
MSHR1029 | Clinical, Australia | JQDB00000000 | I, R, P |
MSHR1153 | Clinical, Australia | CP009271, CP009272 | I, R, P |
MSHR1357 | Clinical, Australia | JQDA00000000 | I, R, P |
MSHR2138 | Clinical, Australia | JRFM00000000 | I, R, P |
MSHR2243 | Clinical, Australia | CP009270, CP009269 | I, R, P |
MSHR2451 | Clinical, Australia | JQEG00000000 | I, R, P |
MSHR2990 | Clinical, Australia | JQHV00000000 | I, R, P |
MSHR3016 | Clinical, Australia | JQEH00000000 | I, R |
MSHR3335 | Clinical, Australia | JRFL00000000 | I, R |
MSHR3458 | Clinical, Australia | JQOB00000000 | I, R |
MSHR3709 | Clinical, Australia | JRFK00000000 | I, R, P |
ABCPW 1 | −15.3150140, 126.1896240 | JQIJ00000000 | I, L, P |
ABCPW 30 | −16.0136890, 128.0230740 | JPVF00000000 | I, L, P |
ABCPW 91 | −15.3150140, 126.1896240 | JPUY00000000 | I, L, P |
ABCPW 107 | −15.3150260, 126.1898070 | JQDN00000000 | I |
ABCPW 111 | −16.5141220, 126.3560540 | JPWT00000000 | I |
A79A | −8.0692000, 142.8755583 | CP009165, CP009164 | I, L, P |
A79C | −8.0692000, 142.8755583 | JQHQ00000000 | I |
A79D | −8.0692000, 142.8755583 | JQHR00000000 | I |
BDU 2 | −10.1579389, 142.1616056 | JPVG00000000 | I, L, P |
B03 | −8.0333333, 142.9500000 | CP009151, CP009150 | I, L, P |
K42 | −8.0577000, 143.0036833 | CP009162, CP009163 | I, L, P |
MSHR3951 | −12.8916220, 131.6061200 | JPVA00000000 | I, R, P |
MSHR3960 | −12.8913950, 131.6064850 | JPVJ00000000 | I, R, P |
MSHR3964 | −12.8913950, 131.6064850 | JPVD00000000 | I, R, P |
MSHR3965 | −12.7900970, 132.1780710 | CP009153, CP009152 | I, R, P |
MSHR3997 | −12.6554170, 132.5470450 | JQII00000000 | P |
MSHR4000 | −12.6552010, 132.5470110 | JPVL00000000 | I, R, P |
MSHR4003 | −12.4078040, 132.9343310 | JPUZ00000000 | I, R, P |
MSHR4009 | −12.4079700, 132.9342690 | JQIL00000000 | I, R, P |
MSHR4012 | −12.4079700, 132.9342690 | JPVH00000000 | I, R, P |
MSHR4018 | −12.4079700, 132.9342690 | JQIK00000000 | I, R, P |
MSHR4032 | −12.4083230, 132.9533260 | JPQL00000000 | I, R, P |
MSHR4299 | −13.8181900, 131.8313620 | JPVC00000000 | I, L, P |
MSHR4300 | −13.8179390, 131.8316290 | JPQI00000000 | I, R, P |
MSHR4303 | −13.8257680, 131.8331820 | JPVM00000000 | I, L, P |
MSHR4304 | −13.8258120, 131.8330280 | JPOA00000000 | I, L, P |
MSHR4308 | −13.8258120, 131.8330280 | JPVB00000000 | I, L, P |
MSHR4372 | −14.5251380, 132.8651370 | JPQJ00000000 | I, L, P |
MSHR4375 | −14.5246650, 132.8646830 | JPVI00000000 | I, L, P |
MSHR4377 | −14.5202880, 132.8633330 | JPQH00000000 | I, L, P |
MSHR4378 | −14.4901000, 132.2500880 | JQDP00000000 | I |
MSHR4462 | −13.2399580, 131.1084030 | JPQM00000000 | I, L, P |
MSHR4503 | −14.1693460, 130.1228070 | JPQN00000000 | I, L, P |
MSHR4868 | −13.4320160, 132.2744090 | JQGZ00000000 | I |
MSHR5492 | −20.6658631, 135.6153707 | JQDO00000000 | I |
MSHR5569 | −12.0483860, 134.2244300 | JQDL00000000 | I |
MSHR5596 | −12.2827850, 134.0835920 | JQDE00000000 | I |
MSHR5608 | −12.2876070, 134.0838240 | JPWQ00000000 | I |
MSHR5609 | −12.3519550, 134.1108660 | JQDJ00000000 | I |
MSHR5613 | −20.6659906, 135.6148314 | JQDK00000000 | I |
MSHR7334 | −13.1708260, 130.6744830 | JQDF00000000 | I |
MSHR7343 | −13.1709770, 130.6739790 | JQDM00000000 | I |
MSHR7498 | −14.1288333, 134.4440333 | JQDH00000000 | I |
MSHR7500 | −14.1420167, 134.4274833 | JREN00000000 | I |
MSHR7504 | −14.1103500, 134.4069500 | JPWR00000000 | I |
MSHR7527 | −14.1903333, 134.3715833 | JPWS00000000 | I |
TSV5 | −19.2573333, 146.7928056 | JQGY00000000 | I |
TSV25 | −19.2643611, 146.7998611 | JPVK00000000 | I, L, P |
TSV28 | −19.2630528, 146.7966556 | JQHU00000000 | I |
TSV31 | −19.2601667, 146.7941111 | JPVE00000000 | I, L, P |
TSV32 | −19.2546944, 146.8012222 | JQHT00000000 | I |
TSV43 | −19.2601667, 146.7941111 | JPQK00000000 | I, L, P |
TSV44 | −19.2630528, 146.7966556 | JQGX00000000 | I |
TSV48 | −19.2564694, 146.7898111 | CP009161, CP009160 | I, L, P |
TSV202 | −19.2806167, 147.0308833 | CP009157, CP009156, CP009155, CP009154 | I, L, P |
Isolation source is reported as clinical or as latitude and longitude for environmental isolates.
Sequence data types are Illumina short-insert (I), Roche 454 (R), Illumina long-insert (L), and Pacific Biosciences (P).