Table 2. List of significantly associated haplotypes.
| Hemangiosarcoma | Haplotype | Frequency (case, control) | ChiSq | Allelic OR | P (raw) | P (empirical) * |
|---|---|---|---|---|---|---|
| 29.7Mb-shared | ACAAGATGT | (0.68,0.49) | 21.55 | 2.12 | 3.45E-06 | 3.10E-06 |
| 29.9Mb-shared | TTTT | (0.72,0.53) | 25.68 | 2.37 | 4.02E-07 | 6.00E-07 |
| 33Mb-shared | CCAAG | (0.21,0.09) | 17.47 | 2.73 | 2.92E-05 | 2.23E-05 |
| 33Mb-BLSA | GCTA | (0.07,0.04) | 3.60 | 1.85 | 5.79E-02 | 8.25E-02 |
| B-cell lymphoma | ||||||
| 29.7Mb-shared | ACAAGATGT | (0.65,0.49) | 6.26 | 1.82 | 1.24E-02 | 1.32E-02 |
| 29.9Mb-shared | TTTT | (0.69,0.53) | 6.826 | 1.83 | 8.98E-03 | 1.92E-02 |
| 33Mb-shared | CCAAG | (0.28,0.09) | 18.91 | 3.94 | 1.37E-05 | 1.87E-05 |
| 33Mb-BLSA | GCTA | (0.21,0.04) | 27.48 | 6.85 | 1.59E-07 | 5.40E-06 |
| Combined | ||||||
| 29.7Mb-shared | ACAAGATGT | (0.67,0.49) | 22.78 | 2.02 | 1.81E-06 | 2.60E-06 |
| 29.9Mb-shared | TTTT | (0.72,0.53) | 27.08 | 2.22 | 1.95E-07 | 3.00E-07 |
| 33Mb-shared | CCAAG | (0.22,0.09) | 22.75 | 2.91 | 1.85E-06 | 1.60E-06 |
| 33Mb-BLSA | GCTA | (0.10,0.04) | 10.78 | 2.68 | 1.03E-03 | 1.30E-03 |
*P-value generated by permutation test with 107 iterations. Significant p-values are shown in bold. Haplotypes that are not significantly associated in one disease are listed for comparison purposes.