Table 3.
ChelpG atomic charges computed on key atoms of the reaction (in e) and averaged electrostatic potentials (in kJ·mol−1·e−1) created by the environment in these atoms. Results obtained at M06-2X/MM level for the open and closed loop conformation
atoms | charges | electrostatic potential | ||
---|---|---|---|---|
RC | TS | RC | TS | |
Open loop conformation | ||||
Cnic | 0.631 | 0.148 | −47.3 ± 20.0 | −39.8 ± 18.1 |
HH | −0.051 | 0.154 | 32.5 ± 20.0 | 66.1 ±19.2 |
Cpyr | 0.665 | 0.518 | 103.2 ± 24.3 | 152.5 ± 22.4 |
Opyr | −0.798 | −1.025 | 146.9 ± 32.8 | 217.8 ± 28.8 |
Hp | 0.361 | 0.349 | 36.4 ± 22.4 | 108.1 ± 25.2 |
NHis | 0.029 | 0.109 | −37.2 ± 21.7 | 10.3 ± 23.4 |
N1NADH | −0.451 | −0.273 | −70.2 ± 23.0 | −70.6 ± 21.9 |
Closed loop conformation | ||||
Cnic | 0.826 | 0.227 | −60.3 ± 18.8 | −64.9 ± 15.8 |
HH | −0.140 | 0.039 | −8.3 ± 18.6 | 20.4 ± 17.0 |
Cpyr | 0.547 | 0.588 | 100.7 ± 24.4 | 100.8 ± 21.4 |
Opyr | −0.666 | −0.944 | 116.5 ± 30.1 | 130.9 ± 31.0 |
Hp | 0.310 | 0.308 | 8.9 ± 21.9 | 42.0 ± 21.8 |
NHis | −0.034 | −0.008 | −81.9 ± 20.4 | −62.8 ± 18.8 |
N1NADH | −0.625 | −0.241 | −104.6 ± 24.9 | −135.8 ± 23.1 |