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. Author manuscript; available in PMC: 2016 Jan 7.
Published in final edited form as: ACS Catal. 2015 Jan 7;5(4):1172–1185. doi: 10.1021/cs501704f

Table 3.

ChelpG atomic charges computed on key atoms of the reaction (in e) and averaged electrostatic potentials (in kJ·mol−1·e−1) created by the environment in these atoms. Results obtained at M06-2X/MM level for the open and closed loop conformation

atoms charges electrostatic potential
RC TS RC TS
Open loop conformation
Cnic 0.631 0.148 −47.3 ± 20.0 −39.8 ± 18.1
HH −0.051 0.154 32.5 ± 20.0 66.1 ±19.2
Cpyr 0.665 0.518 103.2 ± 24.3 152.5 ± 22.4
Opyr −0.798 −1.025 146.9 ± 32.8 217.8 ± 28.8
Hp 0.361 0.349 36.4 ± 22.4 108.1 ± 25.2
NHis 0.029 0.109 −37.2 ± 21.7 10.3 ± 23.4
N1NADH −0.451 −0.273 −70.2 ± 23.0 −70.6 ± 21.9
Closed loop conformation
Cnic 0.826 0.227 −60.3 ± 18.8 −64.9 ± 15.8
HH −0.140 0.039 −8.3 ± 18.6 20.4 ± 17.0
Cpyr 0.547 0.588 100.7 ± 24.4 100.8 ± 21.4
Opyr −0.666 −0.944 116.5 ± 30.1 130.9 ± 31.0
Hp 0.310 0.308 8.9 ± 21.9 42.0 ± 21.8
NHis −0.034 −0.008 −81.9 ± 20.4 −62.8 ± 18.8
N1NADH −0.625 −0.241 −104.6 ± 24.9 −135.8 ± 23.1