| GAPDH: | 5′-TTTGTGATGGGTGTGAACCACG-3′ (sense) |
| 5′-TTGTGAGGGAGATGCTCAGTGTTG-3′ (antisense) | |
| Rps18: | 5′-TGCGAGTACTCAACACCAACATCG-3′ (sense) |
| 5′-GCCAGTGGTCCTGGTGTGCTGA-3′ (antisense) | |
| Smo: | 5′-TGCCACCAGTGCAGTTCCTCG-3′ (sense; endogenous-specific) |
| 5′-GGTGTGCTCTCAGGAAGAGCCAT-3′ (antisense; endogenous/exogenous) | |
| SmoA1: | 5′-CCCATGGAGAAGTCCGAGTC-3′ (sense; exogenous-specific) |
| 5′-GGTGTGCTCTCAGGAAGAGCCAT-3′ (antisense; endogenous/exogenous) | |
| Gli1: | 5′-TCACCCTGCCATGAAACTTTCACC-3′ (sense) |
| 5′-TCATGGGAAAGAGGAGGGCTCA-3′ (antisense) | |
| Nkx3.2: | 5′-AACCGTCGCTACAAGACCAAACG-3′ (sense) |
| 5′-GGGACGCAGGAATCCTTCTTTG-3′ (antisense) | |
| Ihh: | 5′-CATGACCCAGCGCTGCAAGG-3′ (sense) |
| 5′-CCTGGAAAGCTCTCAGCCGG-3′ (antisense) | |
| Col X: | 5′- CCCCATCCCATTTATGAGATTCTG-3′ (sense) |
| 5′- GAGCCATACCTGGTCATTTTCTGTG-3′ (antisense) | |
| Wnt1: | 5′-CCTCACGACCTCGTCTA-3′ (sense) |
| 5′-AGTGGAAGGTGCAGTTG-3′ (antisense) | |
| Wnt3a: | 5′-GGAGTTTGCCGATGCCA-3′ (sense) |
| 5′-CGCACCCATCTATGCCA-3′ (antisense) | |
| Wnt4: | 5′-TTTGACGGTGCCACGGA-3′ (sense) |
| 5′-TTGCGCTGTGTGGAAGC-3′ (antisense) | |
| Wnt5a: | 5′-TCCGGACTACTGTGTGC-3′ (sense) |
| 5′-AGCAGCACCAGTGAAAC-3′ (antisense) | |
| Wnt7a: | 5′-ATATCGAGAAGTCACCCA-3′ (sense) |
| 5′-AGCACCAGTGGAATTTG-3′ (antisense) | |
| Lrp5: | 5′-AACGTGGACGTGTTTTA-3′ (sense) |
| 5′-AGTCCGAATTCAAGTCC-3′ (antisense) | |
| Lrp6: | 5′-GTGACTATGCTCCTAGCC-3′ (sense) |
| 5′-TGGTGGGAGTAACTCCT-3′ (antisense) | |
| Sfrp1: | 5′-GGCCCATCAAGAAGAAG-3′ (sense) |
| 5′-GGGACACTCGTGGTTTT-3′ (antisense) | |
| Sfrp2: | 5′-GAGACACCAAGATCATCC-3′ (sense) |
| 5′-GTTTCACGGAGGTGATC-3′ (antisense) | |
| Sfrp3: | 5′-GTGACTATGCTCCTAGCC-3′ (sense) |
| 5′-TGGTGGGAGTAACTCCT-3′ (antisense) |