Skip to main content
. Author manuscript; available in PMC: 2015 Feb 19.
Published in final edited form as: Hum Genet. 2014 Oct 4;133(12):1513–1523. doi: 10.1007/s00439-014-1490-9

Figure 2. Focused LocusZoom plot of SNP association analyses of genotyped and imputed SNPs within the strongest association interval on chr15q21.2-22.3.

Figure 2

Labeled are candidate genes associated within the regions based on prior studies. We focus on the chr15q21.2-22.3, as it is the region one −log10 down from the − log10 value of the FWER, calculated from n=1000 permutations. The index SNP (SNP with most statistically significant p value) is color coded in purple. The LD between the index SNP and nearby SNPs is indicated by the color coding for the SNP associations, where red indicates high LD (r2 <0.8), orange r2 0.6–0.8, green r2 0.4–0.6, light blue r2 0.2–0.4 and dark blue indicates r2 0.20-0.