Figure 6.

Frequency of the alternative allele on chromosome 3. Frequency of alternative allele in 100 bp windows in the 3 stretches of chromosome 3 corresponding to the deletions identified in ARR and NER. Frequency was calculated as the number of reads of the alternative allele with respect the total number of reads. The partner of shift detected in the allelic frequency of the 6, 7–8, 6 Mb deletion in both ARR and NER indicates the occurrence of a meiotic recombination event in the genome of reference (www.phytozome.net).