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. Author manuscript; available in PMC: 2015 Feb 19.
Published in final edited form as: Cancer Res. 2012 Aug 3;72(19):4909–4919. doi: 10.1158/0008-5472.CAN-12-2194

Table 2. List of genes differentially expressed in 131/4-5B1 and B2 versus 113/6-4L but not 113/6-4L versus WM239.

Normalized t test P-value Common Description
Upregulated
5.3 8.9E-06 VEX Variable charge, X-linked
4.8 7.9E-05 VCX3A Variable charge, X-linked 3A
3.5 6.1E-04 na Hypothetical gene supported by BC056506; NM 004679
2.7 5.2E-04 NELL1 NEL-like 1 (chicken)
2.7 5.9E-06 C10orf33 Chromosome 10 open reading frame 33
2.1 2.1E-03 EDNRB Endothelin receptor type B
2.1 3.7E-04 DCT Dopachrome tautomerase (dopachrome delta-isornerase)
2.0 5.0E-03 P8 p8 protein (candidate of metastasis 1)
1.9 1.1E-02 FLJ32942 Hypothetical protein FLJ32942
1.7 4.2E-03 CXorf4B Chromosome X open reading frame 43
1.7 2.1E-03 VCY Variable charge, Y-linked
1.7 3.9E-04 PLXNC1 Plexin C1
1.7 4.4E-03 BCL2A1 BCL2-related protein A1
1.7 5.7E-04 KBTBD9 Kelch repeat and BTB (POZ) domain containing 9
1.6 4.4E-05 GPM6B Glycoprotein M6B
1.6 1.4E-04 GPR143 G protein-coupled receptor 143
1.6 2.SE-03 ZFYVE16 Zinc finger, FYVE domain containing 16
1.6 1.3E-04 CDH3 Cadherin 3, type 1, P-cadherin (placental)
1.6 6.7E-04 MCOLN3 Mucolipin 3
1.6 5.5E-04 LOC255313 Hypothetical protein LOC255313
1.5 1.9E-05 ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B
1.5 1.2E-03 ITIH5 Interalpha (globulin) inhibitor H5
1.5 9.0E-04 ETS1 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)
1.5 1.9E-03 C3orf6 Chromosome 3 open reading frame 6
1.5 2.1E-02 CXorf48 Chromosome X open reading frame 48
1.5 1.4E-03 KIAA0220 PI-3-kinase–related kinase SMG-1-like
1.5 3.1E-03 MY05A Myosin VA (heavy polypeptide 12, rnyoxin)
1.5 7.7E-04 SDCBP Syndecan binding protein (syntenin)
Downregulated
0.67 8.SE-04 CDKN1A Cyclin-dependent kinase inhibitor 1A (p21, Cip1)
0.67 2.8E-04 KIAA1914 KIAA1914
0.67 9.2E-02 IGFBP5 Insulin-like growth factor binding protein 5
0.66 9.0E-04 CREG1 Cellular repressor of E1 A-stimulated genes 1
0.66 5.9E-03 PRDX1 Peroxiredoxin 1
0.66 1.2E-03 ADM Adrenomedullin
0.66 8.7E-03 BCAS3 Breast carcinoma amplified sequence 3
0.65 6.4E-05 PPP2R4 Protein phosphatase 2A, regulatory subunit B1 (PR 53)
0.65 2.1E-04 L1 CAM L1 cell adhesion molecule
0.65 8.0E-02 TNC Tenascin C (hexabrachion)
0.65 2.2E-03 COL9A3 Collagen, type IX, alpha 3
0.63 2.7E-03 NEDD9 Neural precursor cell expressed
0.63 2.1E-03 TJP1 Tight junction protein 1 (zona occludens 1)
0.63 6.5E-03 LOC2054O1 Hypothetical protein LOC285401
0.62 6.3E-03 ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide
0.62 1.3E-03 PFN2 Profilin 2
0.61 1.1E-01 THBS1 Thrombospondin 1
0.56 4.1E-02 CD74 CD74 antigen
0.56 2.4E-04 GPR126 G protein-coupled receptor 126
0.55 1.3E-03 BIRC7 Baculoviral IAP repeat-containing 7 (livin)
0.53 4.2E-03 SERPINA3 Serine (or cysteine) proteinase inhibitor, clade A
0.53 3.4E-04 MTUS1 Mitochondrial tumor suppressor 1
0.52 4.5E-03 FAM38B Family with sequence similarity 38, member B
0.32 1.1E-03 MPZ Myelin protein zero (Charcot-Marie-Tooth neuropathy 1 B)