Table 1. Major alleles expressed as determined by MHC I genotyping.

	Animal ID
	286–07	256–00	211–02	290–07	225–97	292–07
Mamu-A Sequences	A1*001	A1*002	A1*004	A1*008	A1*004	A1*001
	A1*004	A1*012	A1*025	A1*023	A1*025
Mamu-B Sequences	B*012	B*017	B*005	B*005	B*001	B*017
	B*022	B*019	B*040	B*040	B*005	B*029
	B*030	B*024	B*044	B*047	B*007	B*041
	B*031	B*029	B*048		B*030	B*048
	B*043		B*064		B*040
	B*073				B*044
	B*074

Comprehensive MHC I genotyping identified major alleles expressed in the six animals whose CD8 T cell responses were mapped longitudinally. Major MHC I alleles were defined as transcripts constituting at least 4% of total MHC I transcripts for a given animal. MHC I alleles previously correlated with slow SIV disease progression are italicized.