Table 1.

Reads (millions and percentages) mapped on the human transcriptome and the M. bovis BCG genome

		Human transcriptome		M. bovis BCG genome
Dataset	Description	M of reads	%	M of reads	%	Total
THP	Uninfected THP-1 cells	30.9	100	–	–	30.9
EGB	M. bovis BCG bacilli	–	–	168	100	168
SPI	Mixed THP-1 and M. bovis BCG RNA	31.8	91.0	3.16	9.0	35.0
IF0	Infected THP-1 cells replicate 0	21.5	98.0	0.45	2.0	21.9
IF1	Infected THP-1 cells replicate 1	38.2	96.0	1.57	4.0	39.7
IF2	Infected THP-1 cells replicate 2	28.0	96.3	1.07	3.7	29.0
IF1ER	Infected THP-1 cells replicate 1 enriched for M. bovis BCG bacilli	18.0	74.7	6.09	25.3	24.0
IF2ER	Infected THP-1 cells replicate 2 enriched for M. bovis BCG bacilli	26.0	88.6	3.35	11.4	29.4