Table 3.
CLASSIFI Results
| Cluster ID | GO ID | g | f | c | n | adjusted p-value | GO name |
|---|---|---|---|---|---|---|---|
| 1 | GO:0000004 | 1826 | 322 | 132 | 39 | 4.804683506 | biological_process unknown |
| 2 | GO:0031424 | 1826 | 9 | 130 | 9 | 5.3152E-07 | keratinization |
| 3 | GO:0005730 | 1826 | 85 | 127 | 17 | 0.591972345 | nucleolus |
| 4 | GO:0005578 | 1826 | 42 | 126 | 14 | 0.004042409 | proteinaceous extracellular matrix |
| 5 | GO:0043492 | 1826 | 12 | 216 | 8 | 0.162121589 | ATPase activity, coupled to movement of substances |
| 6 | GO:0005739 | 1826 | 111 | 131 | 36 | 2.18337E-12 | mitochondrion |
| 7 | GO:0007049 | 1826 | 110 | 294 | 53 | 4.53879E-12 | cell cycle |
| 8 | GO:0000004 | 1826 | 322 | 172 | 58 | 0.000846032 | biological_process unknown |
| 9 | GO:0005554 | 1826 | 322 | 340 | 100 | 2.14525E-05 | molecular_function unknown |
| 10 | GO:0005783 | 1826 | 82 | 158 | 21 | 0.034984589 | endoplasmic reticulum |
Table 3: CLASSIFI Results: Column heads: Cluster ID: k means cluster number, GO ID: Gene Ontology identifier, g: total number of probes in data set, f: total number of probes within given Gene Ontology identifier in the data set, c: the number of probes within each cluster, n: the number of probes with a given Gene Ontology identifier within each cluster, adjusted p-value: probability that genes with a given Gene Ontology identifier that would co cluster by chance alone given the proportion of genes annotated with the given term in the data set, GO name: Gene Ontology name