Table 2.
Distribution of por genes and chloroplast-encoded LIPOR genes in rhodophytes and CASH algae
| Por genes in genus (this paper) | Chloroplast-encoded LIPOR genes | Chloroplast genome accession | |||||
|---|---|---|---|---|---|---|---|
| Taxon | Species | Culture ID | chlL | chlN | chlB | ||
| Rhodophyta | |||||||
| Bangiophyceae | Cyanidioschyzon merolae | Strain 10D | 3 | - | - | - | NC_004799 |
| Bangiophyceae | Cyanidium caldarium | RK1 | - | -Δ | - | NC_001840 | |
| Bangiophyceae | Porphyra purpurea | Avonport | 1 | + | + | + | NC_000925 |
| Bangiophyceae | Pyropia haitanensis | PH-38 (voucher) | 1 | + | + | + | NC_021189 |
| Bangiophyceae | Pyropia yezoensis | U-51 | 1 | + | + | + | NC_007932 |
| Florideophyceae | Calliarthron tuberculosum | 1 | + | + | + | NC_021075 | |
| Florideophyceae | Chondrus crispus | 1 | - | - | - | NC_020795 | |
| Florideophyceae | Gracilaria tenuistipitata var. liui | 1 | - | - | - | NC_006137 | |
| Florideophyceae | Gracilaria salicornia | ARS08332 (voucher) | 1 | - | - | - | KF861575 |
| Halymeniaceae | Grateloupia taiwanensis | - | - | - | NC_021618 | ||
| Porphyridiophyceae | Porphyridium purpureum | NIES 2140 | 1 | - | - | - | AP012987 |
| Cryptophyta | |||||||
| Chroomonadaceae | Chroomonas mesostigmatica | CCMP1168 | 2 | + | ψ | ? | EU233753; EU233756 |
| Chroomonadaceae | Chroomonas pauciplastida | CCMP268 | 2 | + | + | + | EU233754; EU233755; EU233748 |
| Chroomonadaceae | Hemiselmis andersenii | CCMP644 | 2 | + | + | + | EU233749; EU233750; EU233747 |
| Chroomonadaceae | Hemiselmis tepida | CCMP443 | 2 | + | + | ? | EU233751; EU233752 |
| Geminigeraceae | Guillardia theta | 1 | - | - | - | NC_000926 | |
| Pyrenomonadaceae | Rhodomonas salina | CCMP1319 | 1–2 | ψ | ψ | ψ | NC_009573 |
| Haptophyta | |||||||
| Isochrysidales | Emiliania huxleyi | CCMP373 | 1 | - | - | - | NC_007288 |
| Pavlovales | Pavlova lutheri | ATCC 50092 | 1–2 | - | - | - | NC_020371 |
| Phaeocystales | Phaeocystis antarctica | CCMP1374 | 2–3 | - | - | - | NC_016703 |
| Phaeocystales | Phaeocystis globosa | Pg-G(A) | 2–3 | - | - | - | NC_021637 |
| Prymnesiales | Chrysochromulina tobin | CCMP291 | 2 | - | - | - | KJ201907 |
| Stramenopila | |||||||
| Bacillariophyceae | Fistulifera sp. | JPCC DA0580 | - | - | - | NC_015403 | |
| Bacillariophyceae | Odontella sinensis | 2 | - | - | - | NC_001713 | |
| Bacillariophyceae | Phaeodactylum tricornutum | CCAP1055/1 | 2 | - | - | - | NC_008588 |
| Bacillariophyceae | Synedra acus | - | - | - | NC_016731 | ||
| Bacillariophyceae | Thalassiosira oceanica | CCMP 1005 | 2 | - | - | - | NC_014808 |
| Bacillariophyceae | Thalassiosira pseudonana | CCMP 1335 | 2 | - | - | - | NC_008589 |
| Dictyochophyceae | Apedinella radians | CCMP1767 | - | - | - | unpublished data* | |
| Dictyochophyceae | Rhizochromulina marina | CCAP950/1 | 1 | + | + | + | unpublished data* |
| Eustimatophyceae | Nannochloropsis gaditana | CCMP526 | 1 | + | + | + | KJ410682 |
| Eustimatophyceae | Nannochloropsis oceanica | LAMB0001 | 1 | + | + | + | KJ410683 |
| Eustimatophyceae | Nannochloropsis oculata | CCMP525 | 1 | + | + | + | KJ410684 |
| Eustimatophyceae | Nannochloropsis salina | CCMP1776 | 1 | + | + | + | KJ410685 |
| Pelagophyceae | Aureococcus anophagefferens | CCMP1984 | 2 | - | - | - | NC_012898 |
| Pelagophyceae | Aureoumbra lagunensis | CCMP1507 | 1 | + | + | + | NC_012903 |
| Pelagophyceae | Pelagomonas calceolata | CCMP1756 | 2 | - | - | - | unpublished data* |
| Phaeophyceae | Desmarestia aculeata | KU-1141 | + | + | ? | unpublished data* | |
| Phaeophyceae | Ectocarpus siliculosus | Ec32 (CCAP1310/4) | 1 | + | + | + | NC_013498 |
| Phaeophyceae | Fucus vesiculosus | + | + | + | NC_016735 | ||
| Phaeophyceae | Nereocystis lutkeana | UWCC MA 708 | + | + | + | unpublished data* | |
| Phaeophyceae | Saccharina japonica | + | + | + | NC_018523 | ||
| Pinguiophyceae | Pinguiococcus pyrenoidosus | CCMP2188 | 1 | + | + | + | unpublished data* |
| Raphidophyceae | Chattonella subsalsa | CCMP217 | 1 | + | + | + | unpublished data* |
| Raphidophyceae | Heterosigma akashiwo | CCMP452 | 2 | - | - | - | EU168191 |
| Raphidophyceae | Heterosigma akashiwo | NIES293 | 2 | - | - | - | NC_010772 |
| Synurophyceae | Synura petersenii | CCMP854 | - | - | - | unpublished data* | |
| Xanthophyceae | Botrydium cytosum | UTEX 157 | + | + | + | unpublished data* | |
| Xanthophyceae | Tribonema aequale | CCMP1275 | 1 | + | + | + | unpublished data* |
| Xanthophyceae | Vaucheria litorea | CCMP2940 | 1 | + | + | + | NC_011600 |
| Dinophyta | |||||||
| Dinotrichales (dinotom) | Durinskia baltica | CS-38 | - | - | - | NC_014287 | |
| Dinotrichales (dinotom) | Kryptoperidinium foliaceum | CCMP1326 | - | - | - | NC_014267 | |
| Chromerida | |||||||
| Chromeraceae | Chromera velia | CCMP2878 | - | - | - | NC_014340 | |
| Vitrellaceae | Vitrella brassicaformis | CCMP3155/RM11 | +, 2 | +, 2 | + | NC_014345 | |
(+) Present in chloroplast genome or Fong and Archibald [46] study; (-) not present in fully-sequenced chloroplast genome; (ψ) present as pseudogene; (?) unknown; (*) Cattolico, Rocap and McKay; (Δ) C. caldarium re-annotated as per [6]. The number of por genes found in this study for a particular genus (not necessarily the same species or strain) is also indicated.