TABLE 5.

Sequences used for phylogenetic analyses^a

Gene name	Nudiviruses						Baculoviruses					Endogenous nudiviruses				Hytrosaviruses		Nimavirus
	ToNV	HzNV-1	PmNV	GbNV	OrNV	DiNV	AcMNPV	LdMNPV	CpGV	NeseNPV	CuniNPV	CcBV	CiBV	MdBV	NlENV	MdSGHV	GpSGHV	WSSV-TH
DNA polymerase	12	131	5	12	1		65	83	111	28	91				+	1	79	27
helicase	118	104	94	88	34	+	95	97	90	61	89			+	+
helicase-2	105	60	79	46	108			50	126						+	104	74
integrase	43	144	55	57	75								+	+	+
fen-1	1	68	20	65	16	+								+	+	76
tk1	22	51	65	17	137										+
guaK				74	23	+									+
p47	115	75	14	69	20	+	40	48	68	49	73	+		+	+
lef-8	88	90	23	49	64		50	51	131	81	26	+	+	+	+	70	40
lef-9	131	75	58	24	96		62	64	117	40	59			+	+	74	33
lef-4	25	98	91	96	42		90	93	95	62	96		+	+	+	87	51
vlf-1	65	121	56	80	30		77	86	106	45	18		+	+	+
vp91/95	16	46	9	2	106	+	83	91	101	84	35		+	+	+
vp39	87	89	22	64	15	+	89	92	96	89	24	+	+	+	+
p33	99	13	8	7	113		92	94	93	24	14			+	+
38K	63	10	59	1	87		98	99	88	59	87	+	+	+	+	73	44
p74	45	11	72	45	126		138	27	60	50	74	+	+	+	+	39	1	72
pif-1	69	55	39	52	60		119	155	75	79	29		+	+	+	29	102
pif-2	7	123	15	66	17	+	22	119	48	55	38		+	+	+	89	53	41
pif-3	13	88	93	3	107		115	143	35	69	46	+		+	+	106	76
pif-4	119	103	96	87	33		96	98	89	60	90	+	+	+	+
pif-6	56	74	88	55	72		68	80	114	41	58	+		+	+
Ac81	123	33	86	14	4		81	89	103	48	106				+	108	78
11K	28	124	100	95	41							+	+	+	+
HzNVorf9	117	9	107									+	+	+
HzNVorf64	112	64	24									+		+
HzNVorf118	31	118	45									+	+	+
HzNVorf128	4	128	42									+	+	+
OrNVorf18	6	122	99	67	18	+									+
OrNVorf19				68	19	+									+
OrNVorf22				72	22	+									+
OrNVorf25				76	25										+
OrNVorf27				78	27	+									+
OrNVorf44				97	44	+									+
GbNVorf19	27	30	98	19	47										+
OrNVorf54				83	54										+
PmNVorf62	19	+	62	51	61										+

^aAn ORF number, when available, or a “+” sign indicates sequences used in the analyses. Virus abbreviations and sequence accession numbers are those defined in Table 1, to which must be added the following: DiNV, Drosophila innubia NV (JN680861 to JN680871) (27); NlENV, Nilaparvata lugens endogenous NV (KJ566523 to KJ566588) (39); CcBV, Cotesia congregata BV (FM201559 to FM201576, FM877774, and FM212911 to FM212915) (37); CiBV, Chelonus inanitus BV (FM201579 to FM201597, FN543427 to FN546858, and FN594617) (37); MdBV, Microplitis demolitor BV (JO913492 to JO979916 and JR139425 to JR139430) (67, 81); WSSV-TH, Penaeus monodon white spot syndrome virus (AF369029).