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. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085

Fig 1. Transitive dependency structure of PathVisio 3.

Fig 1

The application consists of eight modules each providing specific functionality. The modules core and data are independent modules (colored in blue) that function as libraries that can be reused outside of PathVisio (PV). Especially the core module is often used as a PV library for reading and writing of pathway files. Other modules in red, gui, desktop and visualization, provide functionality that is used by other modules. Green modules, gex, statistics and plugin manager, are not used by other PV modules but can be used by PV plugins. The PV JavaApplet version integrated in WikiPathways uses the core and gui modules.