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. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085

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© 2015 Kutmon et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Fig 2 — The plugin repository stores all plugin files and their dependencies. The RepoIndex library is used to create a repository.xml file which contains the dependency indexes of all plugins. Metadata about plugins is stored in the PathVisio plugin database which is then exported into a pathvisio.xml file. The PathVisio 3 plugin manager retrieves data from both files to facilitate the installation of plugins in PathVisio 3.